Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1169 663 0.0 seq4404 170 3e-37 >seq1169 Length=8375 Score = 663 bits (734), Expect = 0.0 Identities = 1261/1845 (68%), Gaps = 23/1845 (1%) Strand=Plus/Plus Query 70823 CGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAAT 70882 ||||||| || |||| ||| ||||| || ||||| ||||| ||||| ||||| | Sbjct 854 CGGCTTT-GTGCGTAAATAATACATTCCAGTTTTAAGACCTGCTTTCCATGAATAAAAGT 912 Query 70883 GCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTT 70942 | || || | ||| ||| | || ||||| | || ||||| | ||||| |||| Sbjct 913 GTATTGAAGTCAATTTACCATAATTTGGTTCGGCGACATGTATATTGAATGACTGGCTTT 972 Query 70943 GATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCC 71002 | || ||||| ||||| || ||||||||||||||||| | | ||| | ||| |||| Sbjct 973 GGTCAATGAAAGCTCCTCTATCTGCAGCCATTTTTATTGTTGATTTTACAGAAATCTCCC 1032 Query 71003 AAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG-GTTTG--TATTCTGAATGGAT 71058 | | ||||||||| || || || | ||||| |||| |||| ||| ||||| || Sbjct 1033 AGACAGTTTTATATAAGTCTCTGAC-ATCTTTAGGAATTGTTTCAATATGTTGAATAGAA 1091 Query 71059 CCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAA 71118 |||| | || | || ||||||| || || |||| ||| || | || |||||| Sbjct 1092 CCACGACTTGACACTATATTATTTTTCATATCATCATCCCACAAATCCAATTCAGTTAAA 1151 Query 71119 ACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAA 71178 | | | | || | | ||||| |||||||| |||||||| || || || | ||||| Sbjct 1152 TCACGTAATAAATAATGGTTAACAACTTGAAACTCTCCAGATAAAACCCTTCTGGTGTAT 1211 Query 71179 ATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 71238 ||||| || || ||||| | ||| ||||||||||||| |||||||| || || || Sbjct 1212 ATATTTGAAGTGTAGGGTTCAAATGATTCATTATTTCCCATGATTTGAGCTGTAGAAGCT 1271 Query 71239 GTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTT 71298 || ||||| ||||| || | || |||||| | |||| | | || ||| ||| Sbjct 1272 GTAGGCATTGGTGCTACAAGGAGGGAATTTCTTACTCCATACTTTTGAATCTTAAGCTTT 1331 Query 71299 AGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATG 71358 | || ||||| ||| | || || |||| || Sbjct 1332 AATTGTTGCCAATCCCACAAATTCGTTGGTTTTTTTCCCCACATGTCATATTGTAGGATT 1391 Query 71359 CCGTTACTAGCGTATGA--TCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTT 71416 || || || || | ||| |||| || || || || || | ||||| || |||| Sbjct 1392 CCTTTGCTTA--TAGGGCTTCCCTCATACGTCTCATAGGGACCATACTTTTCAGCCAGTT 1449 Query 71417 CACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTT 71476 ||||||| || ||||| | | ||||| || ||||| ||||| | | ||| | | Sbjct 1450 CACAACTTGCTTCTAAGGAACTGTAATATATCGTTTCAAAAATTTGTTGATTTAAAAGAA 1509 Query 71477 GTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAA 71536 ||||| ||| ||| | |||||| | | ||| | || || || || || |||| Sbjct 1510 AGGCTTCTTCGCTTTCATAGGGATAACGCATTAAAATTAGAGCATCAGCAAAGCCCTGAA 1569 Query 71537 CGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAAT 71596 ||||||| || ||||| | |||||| ||||| || ||| ||| | | |||||||| Sbjct 1570 CGCCAATGCCAATAGGACGATGTCTCAAGTTAGACTTTCGAGCCTCTTGCAAAGGATAAT 1629 Query 71597 AATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTT 71656 |||| || || || |||||||| ||||||| || || ||| || ||||||| | Sbjct 1630 AATTGATGTCAATTATTTTATTTAGATTTCGTGTTACTATTTTCGTTACTTCCTTTAACT 1689 Query 71657 TGAGAAAATCAAATCTCCCATCTATT---ACAAACACGTTCAAGGCAACAGATGCCAGAT 71713 | |||||| || | || ||||||| || ||||||| ||||||| || Sbjct 1690 TTTCGAAATCATATTTTTTTTCCGAGGACACAAACATATTTAAGGCAATCGATGCCAAAT 1749 Query 71714 TACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTAC 71773 | || || || | |||| | | | ||||| || |||||| ||||| | |||||| | Sbjct 1750 TGCATACCGCAATTTCATCTGGTGCAGAATATTCTACAATTTCTGTGCATAAATTACTGC 1809 Query 71774 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 71833 | || ||||| || | ||||||||| || || ||| | ||||| | ||| ||| | | | Sbjct 1810 ATTTAATGGTGCCAACATTTTGTTGGTTGCTTTTTCTATTACATGAATCTTTAAACAACA 1869 Query 71834 TAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 71893 || | ||||| |||||||| | |||| ||| || || | ||| | | | || | Sbjct 1870 TATATGGAGTGCCAGTTTCTACTTGAGCTTCAATTATAGAAAACCAAAGAGATTGTGCTT 1929 Query 71894 TTATTATATT-CTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCG 71952 | ||| | | |||| | || || ||| |||| | |||||| ||| |||||| Sbjct 1930 TAATTTTTCTACTTGCGCGACCTT-CTTGTTCATATTTTTCATATAACTTTTCAAACTCG 1988 Query 71953 TCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCA 72012 || |||||| ||| | | ||||| |||| || |||||||| | ||||||||||| | Sbjct 1989 TCACCCCAAACATCATGAAGGCCAGGGCATTTATGAGGACACATAAGTGACCACTCTCGA 2048 Query 72013 TCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTG 72072 || || | ||||||||||||||| || || |||||||||||||| ||||| ||| | Sbjct 2049 TCTTCCTCTACTCGTTTCATAAAAAGGTCTGGAATCCAAAGAGCGTAAAATAAATCACGA 2108 Query 72073 GTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAA 72132 | ||| || || || ||||| ||||| ||||| ||||| | |||| | | ||| || | | Sbjct 2109 GCTCTGTGTTCTTCCTTTCCAGTATTTTTTTTTAGATCCAAGAACTCGAAAATGTCTGCA 2168 Query 72133 TGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATG 72192 ||||| || || || || || || | |||| |||| || ||||| ||||||| Sbjct 2169 TGCCAAGGCTCTAAATAAATAGCAAATGCTCCAGGCCTCTTACCACCTCCTTGATCTACA 2228 Query 72193 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTG 72252 |||| ||| |||||| ||||||| | |||||| | || ||||| |||| |||||| Sbjct 2229 TATCGTGCGACATTATTAAAAACTCTAAGCATTGGCACAAGTCCATTCGATGTACCATTA 2288 Query 72253 GTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCC 72310 || || || || | | || | |||||||| | || ||| || ||||||||| | Sbjct 2289 GTTCCCGAAATTGAAGTACCCTTAGCACGAATGCAATGAACATT--TATACCTATTCCAC 2346 Query 72311 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTAT 72370 | || ||| || || | || ||| ||| || | | | | ||||| |||||| || Sbjct 2347 CGGCAGATTTTGATATCATCGCACATTGTTCTACAGATTTAAAAATGCCTTCTATAGAAT 2406 Query 72371 CATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTA 72429 | | | || |||||| |||||||| ||| | ||| ||||| | ||| | ||| | Sbjct 2407 CCGCTACCATTGTTAA-AAGAAAACATGAAGATAGTTGCGGACGATTGGTTGCAGCAGCA 2465 Query 72430 AATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATA 72489 || || ||||| || || ||||| || | ||| || |||||||| || || || || Sbjct 2466 AACAAAGTAGGTGATGCATGCGTGAAGTAACGTTCCGAAAGTAGATTATAAGTTTCTATT 2525 Query 72490 GCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGG 72548 |||| || |||||| || | ||||| || | ||| |||||||||||||| || ||||| Sbjct 2526 GCTGCATCAATATCCTCACCG-TGTATACCAATCGCAACACGCATTAACATGTGTTGAGG 2584 Query 72549 TCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACC 72608 ||| ||| ||||||| |||||||| || || || ||| ||||||||||||||| || Sbjct 2585 TCTCTCAGCGATCTTTCCGTTTATTTTTAATAAATACGATCGTTCCAAAGTTTTAAATCC 2644 Query 72609 AAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATT 72653 ||||||||| || ||| || || ||||||||||| | ||||| Sbjct 2645 AAAATAGTTATAACCAAAATCACGGTCGTAAATAATTGCGGAATT 2689 Score = 107 bits (118), Expect = 3e-18 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 72771 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATC 72830 ||| |||||||| ||||||||||||||||| || ||||| ||||||| |||||| ||||| Sbjct 6615 TTTCTTTGTTTCTTTGTGTAGATTTGATACTGCAATTCTTGCGGCTAAAATGGCGTAATC 6674 Query 72831 TGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTC 72884 || || | |||||| || | ||||| ||||| ||||| | | |||| || || Sbjct 6675 TGCGTGATTTGTAGTCAAACTTGCTGCAATTTCAGCTGCTAAATTGTCTAACTC 6728 >seq4404 Length=3800 Score = 170 bits (188), Expect = 3e-37 Identities = 404/603 (67%), Gaps = 12/603 (2%) Strand=Plus/Minus Query 41718 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTG---AGACATAACTCCCATTT 41774 ||||||||||| |||| |||| |||| |||||| | |||||| || ||||| Sbjct 3087 TTTAAAAGTCAGCATCCAAAGTAAAAACGTTGTCTAGACGGTTAGACATTACACCCATGC 3028 Query 41775 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTT 41834 ||| ||||| || || ||| |||||||| || ||||| || |||| || || || Sbjct 3027 GTTGATATTCGCCTACTTTTTTCTCGAAAAAGTTCGTCTTGCCGTCCAGCGAAATCAATT 2968 Query 41835 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 41894 ||||||| || ||||| | || || ||||| | || | |||| | | Sbjct 2967 CCATGAATGTGAATGGATTCTTTGTGTTGTAGATTTTGCCCACGCCGAGTTCAACTAGTA 2908 Query 41895 ATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 41954 | ||| |||| || || |||||| ||||| || ||||||||| || || || | Sbjct 2907 GGCGATCAGCGACAAACTCAATATATTCCGACATCAGTTTACAATTCATGCCAATCAGGT 2848 Query 41955 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 42014 |||| || | || | || | ||||| || || || ||| || || | || || Sbjct 2847 TAACCGGCAATGCATCGGTCAAGAATTCCTGCTCTATTTTGACTGCCTCCGAAATGATTT 2788 Query 42015 --ATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCA-AACATGCGA 42071 || ||| | ||| | || | | || ||||| | ||||| | |||| || | Sbjct 2787 CAATAATACGCT--CTTTGGTTGGACGCTGCACCAAATGATGGAACATAAGAACA-GCAA 2731 Query 42072 AATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 42131 | || ||||| | ||| ||||| | ||||||||| ||||| || || | || |||| Sbjct 2730 AGTCACAGTGTAAACCTTCATCACGCGAAATTAATTCATTGGAGAATGTTAAACCAGGCA 2671 Query 42132 TTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTT 42191 | |||||||| || || |||||||| || |||||||| ||| |||||| || || | Sbjct 2670 TAAGGCCACGTTTCTTCAGCCAAAAGATGGACGCAAAACTGCCACTAAAGAATATGCCCT 2611 Query 42192 CTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--ACTGTCATG-TATCCACT 42248 | || || ||||||||||||| |||||| || || || | | ||| ||||| Sbjct 2610 CGACCGCAGCAAAGGCAATAATTCTCTCACCGAAATTAGCTGATTTCGATGAAATCCAAG 2551 Query 42249 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 42308 | |||||||| ||||| ||| ||| ||||| || || || ||||| || |||| Sbjct 2550 AGAGCGCCCAATCAGCCTTGCGTTTAACAGCGGGCATGGTCTCAATTGCATTGAAAAGAT 2491 Query 42309 AGT 42311 ||| Sbjct 2490 AGT 2488 Score = 120 bits (132), Expect = 4e-22 Identities = 191/274 (70%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||| | | ||| || ||||| |||| ||||||||||| || || | ||||| ||||| Sbjct 2406 ATCTCTTATATAGGTGTCGATTAAAACGCTATACATTTCGGAGTGCACATTTTCCATGGC 2347 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 || || || || ||||| || | ||||| || || || |||||| | || || || Sbjct 2346 AATTTGGAAGCCATAGAAGCAACGTGCCTCAGTCACTTGAACTTCTTGGCTGAAACGCTC 2287 Query 42445 AGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 42504 | |||||||| ||||| || || || || ||||| || ||||| || || ||| Sbjct 2286 GACCAAATTTTCATTCACAATGCCATCGGAAGCAGCAAAGAAAGCCAACACGTGCGATAT 2227 Query 42505 AAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTAC 42564 |||| |||| || | ||| |||||| | | || || || | |||||| Sbjct 2226 GAAATGACGCTCGTTATCAGTAAGCTTAGCCCAATCTGTCAAGTCCTTCGACAGATCTAC 2167 Query 42565 TTCTTCTACCGTCCAAAATGATGCTTCTGCCTTT 42598 ||| || || ||||| |||||||| ||||||||| Sbjct 2166 TTCCTCAACTGTCCAGAATGATGCCTCTGCCTTT 2133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670975836329480