Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq1169 663 0.0
seq4404 170 3e-37
>seq1169
Length=8375
Score = 663 bits (734), Expect = 0.0
Identities = 1261/1845 (68%), Gaps = 23/1845 (1%)
Strand=Plus/Plus
Query 70823 CGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAAT 70882
||||||| || |||| ||| ||||| || ||||| ||||| ||||| ||||| |
Sbjct 854 CGGCTTT-GTGCGTAAATAATACATTCCAGTTTTAAGACCTGCTTTCCATGAATAAAAGT 912
Query 70883 GCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTT 70942
| || || | ||| ||| | || ||||| | || ||||| | ||||| ||||
Sbjct 913 GTATTGAAGTCAATTTACCATAATTTGGTTCGGCGACATGTATATTGAATGACTGGCTTT 972
Query 70943 GATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCC 71002
| || ||||| ||||| || ||||||||||||||||| | | ||| | ||| ||||
Sbjct 973 GGTCAATGAAAGCTCCTCTATCTGCAGCCATTTTTATTGTTGATTTTACAGAAATCTCCC 1032
Query 71003 AAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG-GTTTG--TATTCTGAATGGAT 71058
| | ||||||||| || || || | ||||| |||| |||| ||| ||||| ||
Sbjct 1033 AGACAGTTTTATATAAGTCTCTGAC-ATCTTTAGGAATTGTTTCAATATGTTGAATAGAA 1091
Query 71059 CCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAA 71118
|||| | || | || ||||||| || || |||| ||| || | || ||||||
Sbjct 1092 CCACGACTTGACACTATATTATTTTTCATATCATCATCCCACAAATCCAATTCAGTTAAA 1151
Query 71119 ACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAA 71178
| | | | || | | ||||| |||||||| |||||||| || || || | |||||
Sbjct 1152 TCACGTAATAAATAATGGTTAACAACTTGAAACTCTCCAGATAAAACCCTTCTGGTGTAT 1211
Query 71179 ATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCA 71238
||||| || || ||||| | ||| ||||||||||||| |||||||| || || ||
Sbjct 1212 ATATTTGAAGTGTAGGGTTCAAATGATTCATTATTTCCCATGATTTGAGCTGTAGAAGCT 1271
Query 71239 GTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTT 71298
|| ||||| ||||| || | || |||||| | |||| | | || ||| |||
Sbjct 1272 GTAGGCATTGGTGCTACAAGGAGGGAATTTCTTACTCCATACTTTTGAATCTTAAGCTTT 1331
Query 71299 AGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATG 71358
| || ||||| ||| | || || |||| ||
Sbjct 1332 AATTGTTGCCAATCCCACAAATTCGTTGGTTTTTTTCCCCACATGTCATATTGTAGGATT 1391
Query 71359 CCGTTACTAGCGTATGA--TCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTT 71416
|| || || || | ||| |||| || || || || || | ||||| || ||||
Sbjct 1392 CCTTTGCTTA--TAGGGCTTCCCTCATACGTCTCATAGGGACCATACTTTTCAGCCAGTT 1449
Query 71417 CACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTT 71476
||||||| || ||||| | | ||||| || ||||| ||||| | | ||| | |
Sbjct 1450 CACAACTTGCTTCTAAGGAACTGTAATATATCGTTTCAAAAATTTGTTGATTTAAAAGAA 1509
Query 71477 GTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAA 71536
||||| ||| ||| | |||||| | | ||| | || || || || || ||||
Sbjct 1510 AGGCTTCTTCGCTTTCATAGGGATAACGCATTAAAATTAGAGCATCAGCAAAGCCCTGAA 1569
Query 71537 CGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAAT 71596
||||||| || ||||| | |||||| ||||| || ||| ||| | | ||||||||
Sbjct 1570 CGCCAATGCCAATAGGACGATGTCTCAAGTTAGACTTTCGAGCCTCTTGCAAAGGATAAT 1629
Query 71597 AATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTT 71656
|||| || || || |||||||| ||||||| || || ||| || ||||||| |
Sbjct 1630 AATTGATGTCAATTATTTTATTTAGATTTCGTGTTACTATTTTCGTTACTTCCTTTAACT 1689
Query 71657 TGAGAAAATCAAATCTCCCATCTATT---ACAAACACGTTCAAGGCAACAGATGCCAGAT 71713
| |||||| || | || ||||||| || ||||||| ||||||| ||
Sbjct 1690 TTTCGAAATCATATTTTTTTTCCGAGGACACAAACATATTTAAGGCAATCGATGCCAAAT 1749
Query 71714 TACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTAC 71773
| || || || | |||| | | | ||||| || |||||| ||||| | |||||| |
Sbjct 1750 TGCATACCGCAATTTCATCTGGTGCAGAATATTCTACAATTTCTGTGCATAAATTACTGC 1809
Query 71774 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 71833
| || ||||| || | ||||||||| || || ||| | ||||| | ||| ||| | | |
Sbjct 1810 ATTTAATGGTGCCAACATTTTGTTGGTTGCTTTTTCTATTACATGAATCTTTAAACAACA 1869
Query 71834 TAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 71893
|| | ||||| |||||||| | |||| ||| || || | ||| | | | || |
Sbjct 1870 TATATGGAGTGCCAGTTTCTACTTGAGCTTCAATTATAGAAAACCAAAGAGATTGTGCTT 1929
Query 71894 TTATTATATT-CTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCG 71952
| ||| | | |||| | || || ||| |||| | |||||| ||| ||||||
Sbjct 1930 TAATTTTTCTACTTGCGCGACCTT-CTTGTTCATATTTTTCATATAACTTTTCAAACTCG 1988
Query 71953 TCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCA 72012
|| |||||| ||| | | ||||| |||| || |||||||| | ||||||||||| |
Sbjct 1989 TCACCCCAAACATCATGAAGGCCAGGGCATTTATGAGGACACATAAGTGACCACTCTCGA 2048
Query 72013 TCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTG 72072
|| || | ||||||||||||||| || || |||||||||||||| ||||| ||| |
Sbjct 2049 TCTTCCTCTACTCGTTTCATAAAAAGGTCTGGAATCCAAAGAGCGTAAAATAAATCACGA 2108
Query 72073 GTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAA 72132
| ||| || || || ||||| ||||| ||||| ||||| | |||| | | ||| || | |
Sbjct 2109 GCTCTGTGTTCTTCCTTTCCAGTATTTTTTTTTAGATCCAAGAACTCGAAAATGTCTGCA 2168
Query 72133 TGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATG 72192
||||| || || || || || || | |||| |||| || ||||| |||||||
Sbjct 2169 TGCCAAGGCTCTAAATAAATAGCAAATGCTCCAGGCCTCTTACCACCTCCTTGATCTACA 2228
Query 72193 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTG 72252
|||| ||| |||||| ||||||| | |||||| | || ||||| |||| ||||||
Sbjct 2229 TATCGTGCGACATTATTAAAAACTCTAAGCATTGGCACAAGTCCATTCGATGTACCATTA 2288
Query 72253 GTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCC 72310
|| || || || | | || | |||||||| | || ||| || ||||||||| |
Sbjct 2289 GTTCCCGAAATTGAAGTACCCTTAGCACGAATGCAATGAACATT--TATACCTATTCCAC 2346
Query 72311 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTAT 72370
| || ||| || || | || ||| ||| || | | | | ||||| |||||| ||
Sbjct 2347 CGGCAGATTTTGATATCATCGCACATTGTTCTACAGATTTAAAAATGCCTTCTATAGAAT 2406
Query 72371 CATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTA 72429
| | | || |||||| |||||||| ||| | ||| ||||| | ||| | ||| |
Sbjct 2407 CCGCTACCATTGTTAA-AAGAAAACATGAAGATAGTTGCGGACGATTGGTTGCAGCAGCA 2465
Query 72430 AATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATA 72489
|| || ||||| || || ||||| || | ||| || |||||||| || || || ||
Sbjct 2466 AACAAAGTAGGTGATGCATGCGTGAAGTAACGTTCCGAAAGTAGATTATAAGTTTCTATT 2525
Query 72490 GCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGG 72548
|||| || |||||| || | ||||| || | ||| |||||||||||||| || |||||
Sbjct 2526 GCTGCATCAATATCCTCACCG-TGTATACCAATCGCAACACGCATTAACATGTGTTGAGG 2584
Query 72549 TCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACC 72608
||| ||| ||||||| |||||||| || || || ||| ||||||||||||||| ||
Sbjct 2585 TCTCTCAGCGATCTTTCCGTTTATTTTTAATAAATACGATCGTTCCAAAGTTTTAAATCC 2644
Query 72609 AAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATT 72653
||||||||| || ||| || || ||||||||||| | |||||
Sbjct 2645 AAAATAGTTATAACCAAAATCACGGTCGTAAATAATTGCGGAATT 2689
Score = 107 bits (118), Expect = 3e-18
Identities = 92/114 (81%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 72771 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATC 72830
||| |||||||| ||||||||||||||||| || ||||| ||||||| |||||| |||||
Sbjct 6615 TTTCTTTGTTTCTTTGTGTAGATTTGATACTGCAATTCTTGCGGCTAAAATGGCGTAATC 6674
Query 72831 TGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTC 72884
|| || | |||||| || | ||||| ||||| ||||| | | |||| || ||
Sbjct 6675 TGCGTGATTTGTAGTCAAACTTGCTGCAATTTCAGCTGCTAAATTGTCTAACTC 6728
>seq4404
Length=3800
Score = 170 bits (188), Expect = 3e-37
Identities = 404/603 (67%), Gaps = 12/603 (2%)
Strand=Plus/Minus
Query 41718 TTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTG---AGACATAACTCCCATTT 41774
||||||||||| |||| |||| |||| |||||| | |||||| || |||||
Sbjct 3087 TTTAAAAGTCAGCATCCAAAGTAAAAACGTTGTCTAGACGGTTAGACATTACACCCATGC 3028
Query 41775 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTT 41834
||| ||||| || || ||| |||||||| || ||||| || |||| || || ||
Sbjct 3027 GTTGATATTCGCCTACTTTTTTCTCGAAAAAGTTCGTCTTGCCGTCCAGCGAAATCAATT 2968
Query 41835 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 41894
||||||| || ||||| | || || ||||| | || | |||| | |
Sbjct 2967 CCATGAATGTGAATGGATTCTTTGTGTTGTAGATTTTGCCCACGCCGAGTTCAACTAGTA 2908
Query 41895 ATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 41954
| ||| |||| || || |||||| ||||| || ||||||||| || || || |
Sbjct 2907 GGCGATCAGCGACAAACTCAATATATTCCGACATCAGTTTACAATTCATGCCAATCAGGT 2848
Query 41955 TAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAG 42014
|||| || | || | || | ||||| || || || ||| || || | || ||
Sbjct 2847 TAACCGGCAATGCATCGGTCAAGAATTCCTGCTCTATTTTGACTGCCTCCGAAATGATTT 2788
Query 42015 --ATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCA-AACATGCGA 42071
|| ||| | ||| | || | | || ||||| | ||||| | |||| || |
Sbjct 2787 CAATAATACGCT--CTTTGGTTGGACGCTGCACCAAATGATGGAACATAAGAACA-GCAA 2731
Query 42072 AATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 42131
| || ||||| | ||| ||||| | ||||||||| ||||| || || | || ||||
Sbjct 2730 AGTCACAGTGTAAACCTTCATCACGCGAAATTAATTCATTGGAGAATGTTAAACCAGGCA 2671
Query 42132 TTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTT 42191
| |||||||| || || |||||||| || |||||||| ||| |||||| || || |
Sbjct 2670 TAAGGCCACGTTTCTTCAGCCAAAAGATGGACGCAAAACTGCCACTAAAGAATATGCCCT 2611
Query 42192 CTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--ACTGTCATG-TATCCACT 42248
| || || ||||||||||||| |||||| || || || | | ||| |||||
Sbjct 2610 CGACCGCAGCAAAGGCAATAATTCTCTCACCGAAATTAGCTGATTTCGATGAAATCCAAG 2551
Query 42249 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 42308
| |||||||| ||||| ||| ||| ||||| || || || ||||| || ||||
Sbjct 2550 AGAGCGCCCAATCAGCCTTGCGTTTAACAGCGGGCATGGTCTCAATTGCATTGAAAAGAT 2491
Query 42309 AGT 42311
|||
Sbjct 2490 AGT 2488
Score = 120 bits (132), Expect = 4e-22
Identities = 191/274 (70%), Gaps = 0/274 (0%)
Strand=Plus/Minus
Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384
|||| | | ||| || ||||| |||| ||||||||||| || || | ||||| |||||
Sbjct 2406 ATCTCTTATATAGGTGTCGATTAAAACGCTATACATTTCGGAGTGCACATTTTCCATGGC 2347
Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444
|| || || || ||||| || | ||||| || || || |||||| | || || ||
Sbjct 2346 AATTTGGAAGCCATAGAAGCAACGTGCCTCAGTCACTTGAACTTCTTGGCTGAAACGCTC 2287
Query 42445 AGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 42504
| |||||||| ||||| || || || || ||||| || ||||| || || |||
Sbjct 2286 GACCAAATTTTCATTCACAATGCCATCGGAAGCAGCAAAGAAAGCCAACACGTGCGATAT 2227
Query 42505 AAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTAC 42564
|||| |||| || | ||| |||||| | | || || || | ||||||
Sbjct 2226 GAAATGACGCTCGTTATCAGTAAGCTTAGCCCAATCTGTCAAGTCCTTCGACAGATCTAC 2167
Query 42565 TTCTTCTACCGTCCAAAATGATGCTTCTGCCTTT 42598
||| || || ||||| |||||||| |||||||||
Sbjct 2166 TTCCTCAACTGTCCAGAATGATGCCTCTGCCTTT 2133
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670975836329480
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