Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq6120 196 7e-45 seq17873 156 6e-33 seq4404 149 9e-31 seq1169 105 1e-17 >seq6120 Length=7451 Score = 196 bits (216), Expect = 7e-45 Identities = 425/632 (67%), Gaps = 8/632 (1%) Strand=Plus/Plus Query 69999 TACACATTTGGAGCGGCAACAGTAGTCGAAGCGTTTTGGATTCGCTCGGCTTCACCGACA 70058 ||||||||||| |||||||| | || |||||||| ||| ||| || Sbjct 4545 TACACATTTGGGATGGCAACAGCACACGTGAATTTTTGGATAAATGCGGTTTCCATGATC 4604 Query 70059 GACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGT 70118 | | |||| |||||| || || || || || || || ||| | |||| ||| |||| | Sbjct 4605 GTCGCGAGGCCGATCTTGGTCCGGTATATGGTTTTCAATGGCGTCACTTTGGCGCCAAAT 4664 Query 70119 ATGTAGAC-TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATT 70177 || |||| ||||| || ||| | || || |||||||| |||||| || | | ||| Sbjct 4665 ATA-AGACCTGCGACGATGATTATACCGGACAAGGTGTTGACCAATTGAAGCAAGTGATT 4723 Query 70178 GACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCA 70237 || || | || |||||||| ||| | |||| | |||| | | ||||| ||| Sbjct 4724 GAAACCATACGCACAAATCCAACGGATCGTCGGATTATTATGTCCGCTTGGAACCCTTTG 4783 Query 70238 GATTTGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGT--ACG 70295 ||| | | || |||||| | ||||| || || ||| | ||||| || ||| | ||| Sbjct 4784 GATATACCGCAGATGGCATTGCCACCATGCCATTGTCTTGCTCAATTCTACGTATCAACG 4843 Query 70296 AT----GGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTA 70351 | || | ||||| ||| ||||||| | || || || ||||| || ||||| Sbjct 4844 ACACGCGGTGAGTTGTCTTGCCAGCTGTATCAACGCAGCGCAGATATGGGTCTGGGTGTG 4903 Query 70352 CCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTG 70411 ||||||||||| || ||| | || | ||| ||||||| ||||| | || ||||| Sbjct 4904 CCCTTTAACATCGCCTCGTATGCACTGCTTACGTACATGATAGCTCATGTGACGGGCCTT 4963 Query 70412 AAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAG 70471 ||| || || ||||| ||||| ||||||| ||||| || || || ||||| || Sbjct 4964 AAACCGGGAGACTTCGTTCACACGCTTGGCGATGCTCATGTCTACAGTAACCACATAGAA 5023 Query 70472 CCATTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGT 70531 ||||| |||| || | | || | || |||| || || || || | || ||| Sbjct 5024 CCATTGAAGGAACAGTTGGCGCGTCACCCACGACCATTCCCGAAACTTGTCATTAAGCGT 5083 Query 70532 AAAGTTGAAAATATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCA 70591 ||||| || || || || |||||| | || || ||| | | | |||||| ||||| Sbjct 5084 AAAGTGGACAACATCGAAGATTTTAAATTTGAGGACTTTGAAGTTATTGGTTACAATCCA 5143 Query 70592 TACCCTAAGATTCCCATGGTTCTGGCTGTTTA 70623 ||||| || |||| |||| |||| ||||| Sbjct 5144 TACCCGAAAATTCAAATGGAGATGGCGGTTTA 5175 >seq17873 Length=13340 Score = 156 bits (172), Expect = 6e-33 Identities = 633/996 (64%), Gaps = 71/996 (7%) Strand=Plus/Plus Query 126724 CCACGGGTCGTCACCGCAGGAGTACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTTG 126783 ||||| || |||| ||| || || ||||| | || || ||| | || || ||| Sbjct 5370 CCACGCGTTGTCAGCGCCGGTGTGCCGAGACGTATACCTGATGGATTTAGTGCCGACTTA 5429 Query 126784 TCTCCGGGTACTGTGTTTTTGTTGCAAGCGATTCTGCACAGTTCGAGGATGCGCTCTGCC 126843 || ||||| || |||||||||||||| ||||| | | | |||||| | ||| || Sbjct 5430 TCGCCGGGCACGGTGTTTTTGTTGCATGCGATACCGACCTCTTCGAGCACAAACTCGGCG 5489 Query 126844 GGTGCTCCTGCGAGTCCCACACTGCGCAAATCCACTAGAATCAGATGCACATCGGTACCG 126903 |||| || | || || | | || || || || || | |||||||||||| || ||| Sbjct 5490 CGTGCACCCGTGATGCCGGCCTTACGTAAGTCAACCAGCACCAGATGCACATCAGTGCCG 5549 Query 126904 CCAGTGGTGACGGTGTAGCCTCGTGAAACGAGTCCCTCTGCCAACAACTGTGCA-TTTCG 126962 ||||||| || |||||| ||| | || || | || | | | ||| ||| | Sbjct 5550 CCAGTGGCCACATCGTAGCCACGTTCGATCAGGCCAGC-GCATAGACGTTTGCTGTTTAG 5608 Query 126963 CACCACTCGTCTTTGGTAGAGTGCAAACTCTAGAGTGGTGGCCTGGTGCATTGCGGTGGC 127022 || ||| | | || || | |||||||| | || |||||||| | | || ||||| Sbjct 5609 CAGCACCTGCTTCTGATACTGCACAAACTCTGGTGTCTTGGCCTGGCGAAAGGCTGTGGC 5668 Query 127023 GATCGCTGCAATCGTGTGATTGTGCGGTCCACCTTGCAGGCCAGGAAACACGGCTCGTTC 127082 || | ||||| || | || || || || || ||||| | ||||| || ||| | | Sbjct 5669 AATGCCGGCAATAGTATTGTTATGTGGGCCGCCCTGCAGTGCCGGAAAGACAGCTTGATT 5728 Query 127083 AAT---TTCCTGC---------------------------TCTAGTGA---------TTT 127103 || ||||| | | || || ||| Sbjct 5729 GATGCGTTCCTCCAAATCGTACGAAATGGGTACGCCGTTTTGTACGGACCGGACGCCTTT 5788 Query 127104 GCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTCAC 127163 |||| | ||||| || ||||| || || || | || || || ||||| || || || || Sbjct 5789 GCGGAAGAAGATAACACCGGCACGTGGGCCGCGCAGTGTTTTATGCGTCGTCGTTGTTAC 5848 Query 127164 AATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATGTG 127223 ||| ||| | |||| ||||| ||| | | | | || |||| ||| |||| || Sbjct 5849 AATATCAGCAAACTCGAAGGGCGAAGGCAGCAGACCGGCGGCCATCATGCCGGCAACATG 5908 Query 127224 TGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCT-CGGAATCGTCTAT 127282 || || || ||||| || ||| | | | ||| ||| || | ||||| || || | Sbjct 5909 CGCCATGTCCGCCATAAGGTAGGCATTGACGGAGTCG-CAAACTTTACGGAAACGGCTGT 5967 Query 127283 AGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGAT 127342 |||| | || | |||||| |||| || || || | | |||||| || | | Sbjct 5968 AGTCGAGCAAACGTGAATAGCATGAAATGCCCGCGATTATGACCTGAGGTTTAAAGATCT 6027 Query 127343 TGGCACT---CTCG-GCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTG 127398 ||||| | ||| ||| || ||||||||| || ||| |||| ||||| || ||| Sbjct 6028 TGGCATTGGACTCCAGCACGT----CATAGTCGATGACTCCCGTCTTGGGATCAACTTTG 6083 Query 127399 TACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA--CGTTGCG----------GAAT 127446 ||||||||||| || ||||| | || || || || | || | || || Sbjct 6084 TACGGCATGCTCTCAAAAAAAATCGAAGTGGCCGAGATCCGCTTCGTCGGCGTCATAAAG 6143 Query 127447 CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTA 127506 || || |||| ||| || || || |||| ||| | ||||| || | | |||||| Sbjct 6144 CCATGTGTCAAGTGACCGCCATCTGGCAAATCCAAGCCCATAATACGGTCATGCGGTCGC 6203 Query 127507 ACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACT 127566 | || |||||||| |||| || |||||| |||||| || ||||| || ||| || Sbjct 6204 AGTATGCCAGTGTAGGCGGCCAAATTGGCCGGCGAGCCAGAATACGGCTGAACATTAACG 6263 Query 127567 CCCCA----TTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAG 127622 ||||| | |||| ||| | |||||| ||| | ||||| ||| || ||| | Sbjct 6264 CCCCACTTCTCCGGA-TCG---AGATTGAAAGCTTCCAATGCTCGCTTCTGCGCAAGCTG 6319 Query 127623 TTCGATGCGATCGATAAACTCGTTACCACCATAGTA 127658 || || |||||| ||| ||| || |||||||| Sbjct 6320 CTCAATCTTATCGATGTACTGGTTGCCGCCATAGTA 6355 >seq4404 Length=3800 Score = 149 bits (164), Expect = 9e-31 Identities = 312/461 (68%), Gaps = 27/461 (6%) Strand=Plus/Plus Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492 || || || || || |||||||| |||||| || ||||||||| ||||||||||||| Sbjct 2595 GCCTTTGCTGCGGTCGAGGGCATATTCTTTAGTGGCAGTTTTGCGTCCATCTTTTGGCTG 2654 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 ||||| || || || ||||| || | || | || || || || || || || || Sbjct 2655 AAGAAACGTGGCCTTATGCCTGGTTTAACATTCTCCAATGAATTAATTTCGCGTGATGAA 2714 Query 125553 GGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGA 125612 || |||||||||||||||| |||| |||| | | || || |||||| Sbjct 2715 GGTTTACACTGTGACTTTGCTGTTCTTATGTTCC---ATCATTTG--------GTGCAGC 2763 Query 125613 -TCCAGCGATGAAAAGGTCATCA---ACATTGTAACCGATGCCGTGAGGATAGAACAAGA 125668 |||| | | || || || | | || | | || || || | ||||| || || Sbjct 2764 GTCCAACCA--AAGAGCGTATTATTGAAATCATTTCGGAGGCAGTCAAAATAGAGCAGGA 2821 Query 125669 GTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGA 125728 || | ||||| | | ||||| | | ||||||||||||| || || || |||| || Sbjct 2822 ATTCTTGACCGATGCATTGCCGGTTAACCTGATTGGCATGAATTGTAAACTGATGTCGGA 2881 Query 125729 GTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGA--TTGGC---CGCAAGATT 125783 || || |||||||| || ||||| ||||| |||||| | ||| |||| || Sbjct 2882 ATATATTGAGTTTGTCGCTGATCGCCTACT-----AGTTGAACTCGGCGTGGGCAAAATC 2936 Query 125784 TACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAAC 125843 |||||| | |||||||| || |||||| || || || || || ||||| ||| Sbjct 2937 TACAACACAAAGAATCCATTCACATTCATGGAATTGATTTCGCTGGACGGCAAGACGAAC 2996 Query 125844 TTTTTCGAGAAGAAGGTCAGCGAGTACAAACGCTACGGTGT 125884 ||||||||||| || || |||| || ||||| ||||| Sbjct 2997 TTTTTCGAGAAAAAAGTAGGCGAATATCAACGCATGGGTGT 3037 >seq1169 Length=8375 Score = 105 bits (116), Expect = 1e-17 Identities = 316/483 (65%), Gaps = 6/483 (1%) Strand=Plus/Minus Query 97782 AGAAACTCTTTGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAAT 97841 ||||| || | || || ||||| ||||| || ||| | || | ||| | | || ||| Sbjct 1303 AGAAATTCCCTCCTTGTAGCACCAATGCCTACAGCTTCTACAGCTCAAATCATGGGAAAT 1244 Query 97842 GCTGAATCTTTTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAG 97901 |||||| |||||||| | ||| ||||| || ||| ||| | ||||||||| Sbjct 1243 AATGAATCATTTGAACCCTACACTTCAAATATATACACCAGAAGGGTTTTATCTGGAGAG 1184 Query 97902 TTTCAATTGACCAACGTGCACTTGGTTCGAGACTTGGAACGGC--TCAATCTGTGGAACG 97959 |||||| | ||| | || | || || || ||| | | || ||||| | | Sbjct 1183 TTTCAAGTTGTTAACCATTATTTATTACGTGATTT--AACTGAATTGGATTTGTGGGATG 1126 Query 97960 ATGACATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACATTACCATCATCC 98019 |||| ||| | || ||| | ||| || |||||| | ||| | || | Sbjct 1125 ATGATATGAAAAATAATATAGTGTCAAGTCGTGGTTCTATTCAACATATTGAAACAATTC 1066 Query 98020 CGGAAGAGTTGCGCAGAATC-TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATC 98078 | |||| | | ||| | || || ||||||||||||||| | || | || Sbjct 1065 CTAAAGATGTCAG-AGACTTATATAAAACTGTCTGGGAGATTTCTGTAAAATCAACAATA 1007 Query 98079 GATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTT 98138 | |||||||| || ||||| | | ||||||||| || || || |||||| | | || Sbjct 1006 AAAATGGCTGCAGATAGAGGAGCTTTCATTGACCAAAGCCAGTCATTCAATATACATGTC 947 Query 98139 GCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTC 98198 ||||| || | || || ||||||| ||||||||||| ||||||| || || Sbjct 946 GCCGAACCAAATTATGGTAAATTGACTTCAATACACTTTTATTCATGGAAAGCAGGTCTT 887 Query 98199 AAGACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTG 98258 || || || ||||| ||| | | |||||| |||| | ||||| |||| |||||| || Sbjct 886 AAAACTGGAATGTATTATTTACGCACAAAGCCGGCAGCAAATGCTATACAATTTACTGTA 827 Query 98259 GAC 98261 ||| Sbjct 826 GAC 824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740878816927480