Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq6120 196 7e-45
seq17873 156 6e-33
seq4404 149 9e-31
seq1169 105 1e-17
>seq6120
Length=7451
Score = 196 bits (216), Expect = 7e-45
Identities = 425/632 (67%), Gaps = 8/632 (1%)
Strand=Plus/Plus
Query 69999 TACACATTTGGAGCGGCAACAGTAGTCGAAGCGTTTTGGATTCGCTCGGCTTCACCGACA 70058
||||||||||| |||||||| | || |||||||| ||| ||| ||
Sbjct 4545 TACACATTTGGGATGGCAACAGCACACGTGAATTTTTGGATAAATGCGGTTTCCATGATC 4604
Query 70059 GACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGT 70118
| | |||| |||||| || || || || || || || ||| | |||| ||| |||| |
Sbjct 4605 GTCGCGAGGCCGATCTTGGTCCGGTATATGGTTTTCAATGGCGTCACTTTGGCGCCAAAT 4664
Query 70119 ATGTAGAC-TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATT 70177
|| |||| ||||| || ||| | || || |||||||| |||||| || | | |||
Sbjct 4665 ATA-AGACCTGCGACGATGATTATACCGGACAAGGTGTTGACCAATTGAAGCAAGTGATT 4723
Query 70178 GACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCA 70237
|| || | || |||||||| ||| | |||| | |||| | | ||||| |||
Sbjct 4724 GAAACCATACGCACAAATCCAACGGATCGTCGGATTATTATGTCCGCTTGGAACCCTTTG 4783
Query 70238 GATTTGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGT--ACG 70295
||| | | || |||||| | ||||| || || ||| | ||||| || ||| | |||
Sbjct 4784 GATATACCGCAGATGGCATTGCCACCATGCCATTGTCTTGCTCAATTCTACGTATCAACG 4843
Query 70296 AT----GGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTA 70351
| || | ||||| ||| ||||||| | || || || ||||| || |||||
Sbjct 4844 ACACGCGGTGAGTTGTCTTGCCAGCTGTATCAACGCAGCGCAGATATGGGTCTGGGTGTG 4903
Query 70352 CCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTG 70411
||||||||||| || ||| | || | ||| ||||||| ||||| | || |||||
Sbjct 4904 CCCTTTAACATCGCCTCGTATGCACTGCTTACGTACATGATAGCTCATGTGACGGGCCTT 4963
Query 70412 AAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAG 70471
||| || || ||||| ||||| ||||||| ||||| || || || ||||| ||
Sbjct 4964 AAACCGGGAGACTTCGTTCACACGCTTGGCGATGCTCATGTCTACAGTAACCACATAGAA 5023
Query 70472 CCATTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGT 70531
||||| |||| || | | || | || |||| || || || || | || |||
Sbjct 5024 CCATTGAAGGAACAGTTGGCGCGTCACCCACGACCATTCCCGAAACTTGTCATTAAGCGT 5083
Query 70532 AAAGTTGAAAATATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCA 70591
||||| || || || || |||||| | || || ||| | | | |||||| |||||
Sbjct 5084 AAAGTGGACAACATCGAAGATTTTAAATTTGAGGACTTTGAAGTTATTGGTTACAATCCA 5143
Query 70592 TACCCTAAGATTCCCATGGTTCTGGCTGTTTA 70623
||||| || |||| |||| |||| |||||
Sbjct 5144 TACCCGAAAATTCAAATGGAGATGGCGGTTTA 5175
>seq17873
Length=13340
Score = 156 bits (172), Expect = 6e-33
Identities = 633/996 (64%), Gaps = 71/996 (7%)
Strand=Plus/Plus
Query 126724 CCACGGGTCGTCACCGCAGGAGTACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTTG 126783
||||| || |||| ||| || || ||||| | || || ||| | || || |||
Sbjct 5370 CCACGCGTTGTCAGCGCCGGTGTGCCGAGACGTATACCTGATGGATTTAGTGCCGACTTA 5429
Query 126784 TCTCCGGGTACTGTGTTTTTGTTGCAAGCGATTCTGCACAGTTCGAGGATGCGCTCTGCC 126843
|| ||||| || |||||||||||||| ||||| | | | |||||| | ||| ||
Sbjct 5430 TCGCCGGGCACGGTGTTTTTGTTGCATGCGATACCGACCTCTTCGAGCACAAACTCGGCG 5489
Query 126844 GGTGCTCCTGCGAGTCCCACACTGCGCAAATCCACTAGAATCAGATGCACATCGGTACCG 126903
|||| || | || || | | || || || || || | |||||||||||| || |||
Sbjct 5490 CGTGCACCCGTGATGCCGGCCTTACGTAAGTCAACCAGCACCAGATGCACATCAGTGCCG 5549
Query 126904 CCAGTGGTGACGGTGTAGCCTCGTGAAACGAGTCCCTCTGCCAACAACTGTGCA-TTTCG 126962
||||||| || |||||| ||| | || || | || | | | ||| ||| |
Sbjct 5550 CCAGTGGCCACATCGTAGCCACGTTCGATCAGGCCAGC-GCATAGACGTTTGCTGTTTAG 5608
Query 126963 CACCACTCGTCTTTGGTAGAGTGCAAACTCTAGAGTGGTGGCCTGGTGCATTGCGGTGGC 127022
|| ||| | | || || | |||||||| | || |||||||| | | || |||||
Sbjct 5609 CAGCACCTGCTTCTGATACTGCACAAACTCTGGTGTCTTGGCCTGGCGAAAGGCTGTGGC 5668
Query 127023 GATCGCTGCAATCGTGTGATTGTGCGGTCCACCTTGCAGGCCAGGAAACACGGCTCGTTC 127082
|| | ||||| || | || || || || || ||||| | ||||| || ||| | |
Sbjct 5669 AATGCCGGCAATAGTATTGTTATGTGGGCCGCCCTGCAGTGCCGGAAAGACAGCTTGATT 5728
Query 127083 AAT---TTCCTGC---------------------------TCTAGTGA---------TTT 127103
|| ||||| | | || || |||
Sbjct 5729 GATGCGTTCCTCCAAATCGTACGAAATGGGTACGCCGTTTTGTACGGACCGGACGCCTTT 5788
Query 127104 GCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTCAC 127163
|||| | ||||| || ||||| || || || | || || || ||||| || || || ||
Sbjct 5789 GCGGAAGAAGATAACACCGGCACGTGGGCCGCGCAGTGTTTTATGCGTCGTCGTTGTTAC 5848
Query 127164 AATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATGTG 127223
||| ||| | |||| ||||| ||| | | | | || |||| ||| |||| ||
Sbjct 5849 AATATCAGCAAACTCGAAGGGCGAAGGCAGCAGACCGGCGGCCATCATGCCGGCAACATG 5908
Query 127224 TGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCT-CGGAATCGTCTAT 127282
|| || || ||||| || ||| | | | ||| ||| || | ||||| || || |
Sbjct 5909 CGCCATGTCCGCCATAAGGTAGGCATTGACGGAGTCG-CAAACTTTACGGAAACGGCTGT 5967
Query 127283 AGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGAT 127342
|||| | || | |||||| |||| || || || | | |||||| || | |
Sbjct 5968 AGTCGAGCAAACGTGAATAGCATGAAATGCCCGCGATTATGACCTGAGGTTTAAAGATCT 6027
Query 127343 TGGCACT---CTCG-GCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTG 127398
||||| | ||| ||| || ||||||||| || ||| |||| ||||| || |||
Sbjct 6028 TGGCATTGGACTCCAGCACGT----CATAGTCGATGACTCCCGTCTTGGGATCAACTTTG 6083
Query 127399 TACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACA--CGTTGCG----------GAAT 127446
||||||||||| || ||||| | || || || || | || | || ||
Sbjct 6084 TACGGCATGCTCTCAAAAAAAATCGAAGTGGCCGAGATCCGCTTCGTCGGCGTCATAAAG 6143
Query 127447 CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTA 127506
|| || |||| ||| || || || |||| ||| | ||||| || | | ||||||
Sbjct 6144 CCATGTGTCAAGTGACCGCCATCTGGCAAATCCAAGCCCATAATACGGTCATGCGGTCGC 6203
Query 127507 ACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACT 127566
| || |||||||| |||| || |||||| |||||| || ||||| || ||| ||
Sbjct 6204 AGTATGCCAGTGTAGGCGGCCAAATTGGCCGGCGAGCCAGAATACGGCTGAACATTAACG 6263
Query 127567 CCCCA----TTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAG 127622
||||| | |||| ||| | |||||| ||| | ||||| ||| || ||| |
Sbjct 6264 CCCCACTTCTCCGGA-TCG---AGATTGAAAGCTTCCAATGCTCGCTTCTGCGCAAGCTG 6319
Query 127623 TTCGATGCGATCGATAAACTCGTTACCACCATAGTA 127658
|| || |||||| ||| ||| || ||||||||
Sbjct 6320 CTCAATCTTATCGATGTACTGGTTGCCGCCATAGTA 6355
>seq4404
Length=3800
Score = 149 bits (164), Expect = 9e-31
Identities = 312/461 (68%), Gaps = 27/461 (6%)
Strand=Plus/Plus
Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTC 125492
|| || || || || |||||||| |||||| || ||||||||| |||||||||||||
Sbjct 2595 GCCTTTGCTGCGGTCGAGGGCATATTCTTTAGTGGCAGTTTTGCGTCCATCTTTTGGCTG 2654
Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552
||||| || || || ||||| || | || | || || || || || || || ||
Sbjct 2655 AAGAAACGTGGCCTTATGCCTGGTTTAACATTCTCCAATGAATTAATTTCGCGTGATGAA 2714
Query 125553 GGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGA 125612
|| |||||||||||||||| |||| |||| | | || || ||||||
Sbjct 2715 GGTTTACACTGTGACTTTGCTGTTCTTATGTTCC---ATCATTTG--------GTGCAGC 2763
Query 125613 -TCCAGCGATGAAAAGGTCATCA---ACATTGTAACCGATGCCGTGAGGATAGAACAAGA 125668
|||| | | || || || | | || | | || || || | ||||| || ||
Sbjct 2764 GTCCAACCA--AAGAGCGTATTATTGAAATCATTTCGGAGGCAGTCAAAATAGAGCAGGA 2821
Query 125669 GTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGA 125728
|| | ||||| | | ||||| | | ||||||||||||| || || || |||| ||
Sbjct 2822 ATTCTTGACCGATGCATTGCCGGTTAACCTGATTGGCATGAATTGTAAACTGATGTCGGA 2881
Query 125729 GTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGA--TTGGC---CGCAAGATT 125783
|| || |||||||| || ||||| ||||| |||||| | ||| |||| ||
Sbjct 2882 ATATATTGAGTTTGTCGCTGATCGCCTACT-----AGTTGAACTCGGCGTGGGCAAAATC 2936
Query 125784 TACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAAC 125843
|||||| | |||||||| || |||||| || || || || || ||||| |||
Sbjct 2937 TACAACACAAAGAATCCATTCACATTCATGGAATTGATTTCGCTGGACGGCAAGACGAAC 2996
Query 125844 TTTTTCGAGAAGAAGGTCAGCGAGTACAAACGCTACGGTGT 125884
||||||||||| || || |||| || ||||| |||||
Sbjct 2997 TTTTTCGAGAAAAAAGTAGGCGAATATCAACGCATGGGTGT 3037
>seq1169
Length=8375
Score = 105 bits (116), Expect = 1e-17
Identities = 316/483 (65%), Gaps = 6/483 (1%)
Strand=Plus/Minus
Query 97782 AGAAACTCTTTGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAAT 97841
||||| || | || || ||||| ||||| || ||| | || | ||| | | || |||
Sbjct 1303 AGAAATTCCCTCCTTGTAGCACCAATGCCTACAGCTTCTACAGCTCAAATCATGGGAAAT 1244
Query 97842 GCTGAATCTTTTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAG 97901
|||||| |||||||| | ||| ||||| || ||| ||| | |||||||||
Sbjct 1243 AATGAATCATTTGAACCCTACACTTCAAATATATACACCAGAAGGGTTTTATCTGGAGAG 1184
Query 97902 TTTCAATTGACCAACGTGCACTTGGTTCGAGACTTGGAACGGC--TCAATCTGTGGAACG 97959
|||||| | ||| | || | || || || ||| | | || ||||| | |
Sbjct 1183 TTTCAAGTTGTTAACCATTATTTATTACGTGATTT--AACTGAATTGGATTTGTGGGATG 1126
Query 97960 ATGACATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACATTACCATCATCC 98019
|||| ||| | || ||| | ||| || |||||| | ||| | || |
Sbjct 1125 ATGATATGAAAAATAATATAGTGTCAAGTCGTGGTTCTATTCAACATATTGAAACAATTC 1066
Query 98020 CGGAAGAGTTGCGCAGAATC-TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATC 98078
| |||| | | ||| | || || ||||||||||||||| | || | ||
Sbjct 1065 CTAAAGATGTCAG-AGACTTATATAAAACTGTCTGGGAGATTTCTGTAAAATCAACAATA 1007
Query 98079 GATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTT 98138
| |||||||| || ||||| | | ||||||||| || || || |||||| | | ||
Sbjct 1006 AAAATGGCTGCAGATAGAGGAGCTTTCATTGACCAAAGCCAGTCATTCAATATACATGTC 947
Query 98139 GCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTC 98198
||||| || | || || ||||||| ||||||||||| ||||||| || ||
Sbjct 946 GCCGAACCAAATTATGGTAAATTGACTTCAATACACTTTTATTCATGGAAAGCAGGTCTT 887
Query 98199 AAGACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTG 98258
|| || || ||||| ||| | | |||||| |||| | ||||| |||| |||||| ||
Sbjct 886 AAAACTGGAATGTATTATTTACGCACAAAGCCGGCAGCAAATGCTATACAATTTACTGTA 827
Query 98259 GAC 98261
|||
Sbjct 826 GAC 824
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740878816927480
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