Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_004456.1 Length=43198 Score E Sequences producing significant alignments: (Bits) Value seq6845 105 2e-18 >seq6845 Length=28003 Score = 105 bits (116), Expect = 2e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39083 ATCTGGTTAAAGGCATTGATGTATGCCTCTTTGATGGCGGCGGCCTGCTTGCCAGTGAAG 39142 || |||||||| ||||||||||| |||||||| | || |||| ||| ||||| || Sbjct 7959 ATTTGGTTAAAAGCATTGATGTACGCCTCTTTAAACTGCGCAGCCTTCTTTCCAGTAAAC 8018 Query 39143 CCCATAACCAGGAAGATAAAGCCGTCTTTGGTCATCTCGTAGACCTTGGATTCGCGGCTT 39202 ||||| || || ||||| ||||| || |||||||| | ||| | ||| ||||| || Sbjct 8019 CCCATGACAAGAAAGATGAAGCCATCCTTGGTCATTTTGTAAAACTTAGATTCTCGAACA 8078 Query 39203 GCTCCGTTACCAATGGTTACTTCTTGAACATGAGCCGAAAAGTTGGCTGATGTAAATTCT 39262 || ||||| ||| || | || |||||| || |||||||| || || | || || Sbjct 8079 GCCCCGTTGTTAATATCTATCTTTTTAACATGGGCTGAAAAGTTAGCCGAAGCGAACTCA 8138 Query 39263 GGTGAGCAGTC 39273 | ||||| || Sbjct 8139 GCAGAGCAATC 8149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138080062722160