Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_004629.1 Length=280334 Score E Sequences producing significant alignments: (Bits) Value seq6703 98.7 2e-15 seq11388 84.2 4e-11 >seq6703 Length=82049 Score = 98.7 bits (108), Expect = 2e-15 Identities = 78/93 (84%), Gaps = 3/93 (3%) Strand=Plus/Minus Query 271736 GAATATGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTC 271795 |||||||||||| ||||||| ||||||||||||||| ||||||||||| | |||| Sbjct 37773 GAATATGGCTCCCCGACCTGGGCTCGAACCAGGGACCTGCGGATTAACAGTCCGTCGCTC 37714 Query 271796 TACCGACTGAGCTATCACGGAATTAAATGGCGC 271828 |||| |||||||||||| ||||| ||||||| Sbjct 37713 TACCAACTGAGCTATCAGGGAAT---ATGGCGC 37684 >seq11388 Length=34222 Score = 84.2 bits (92), Expect = 4e-11 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 273267 AAAATGGTCGGAGTGGGGAGACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCT 273326 ||||||||||||| || | || |||||||| |||| ||||||||||||||| ||||| Sbjct 17093 AAAATGGTCGGAGCGGCGGGATTCGAACTCGCGACCCTCTGCTCCCAAAGCAGATGCGCT 17034 Query 273327 ACCA-ACTGCGCTACACTCCG 273346 |||| ||||||||| ||||| Sbjct 17033 ACCAGGCTGCGCTACGCTCCG 17013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896722473397520