Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq17788 109 4e-19 seq489 104 2e-17 seq15440 87.8 1e-12 >seq17788 Length=7208 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 ||||| ||||| | || || ||||| || || || ||||| || ||| | ||| Sbjct 2409 AAAACCAAATGCAAAGTCGATTCTTTCTGGATATTATAATCAGAGAGTGTTCGACCATCT 2350 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || || ||||||||||| | || | ||||||||| || ||||||||||||||||| Sbjct 2349 TCCAACTGTTTGCCAGCAAAGATTAGACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCC 2290 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| ||| || ||| |||| || || || | ||| || || | || ||||| Sbjct 2289 TGAATCTTGGCTTTGACATTTTCGATAGTGTCCGAAGGTTCGACCTCAAGAGTGATGGTC 2230 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 ||||| || || ||||| |||||||| ||||| || Sbjct 2229 TTACCCGTGAGGGTTTTAACAAAAATCTGCATGTT 2195 >seq489 Length=77466 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| ||||| || || ||||| |||||||| ||| || | | | ||||| Sbjct 4412 ACCAAATGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCATCTTCC 4471 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| ||||| || | |||| ||| |||||||| ||||| || |||||||| Sbjct 4472 AGTTGCTTGCCGGCAAAGATCAGACGCTGTTGGTCTGGGGGAATGCCCTCTTTGTCCTGG 4531 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || ||||| || | || || || ||||||||||| ||| Sbjct 4532 ATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCAACCTCCAAGGTAATGGTCTTA 4591 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || || |||||||| || || || ||||| || Sbjct 4592 CCGGTGAGAGTTTTGACGAATATCTGCATTTT 4623 >seq15440 Length=3601 Score = 87.8 bits (96), Expect = 1e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 91698 GGGATTGAAATGCTCACCAGCAGATGTGCAACCGTTAGTTGTGTCGCCGAACTCGTGCAC 91757 |||||||||||| |||||| ||||||||||| || || |||| |||||||||||||| Sbjct 997 GGGATTGAAATGTGGACCAGCCGATGTGCAACCATTGGTATTGTCACCGAACTCGTGCAC 1056 Query 91758 ATGAAAACCGTGTAAACCCTT 91778 ||| || ||||| | |||||| Sbjct 1057 ATGGAATCCGTGCAGACCCTT 1077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362093245029093