Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq17788 111 1e-19 >seq17788 Length=7208 Score = 111 bits (122), Expect = 1e-19 Identities = 158/222 (71%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| ||||||||||| ||||| ||||| || ||||| |||||||| | | ||| | Sbjct 2412 CGCAAAACCAAATGCAAAGTCGATTCTTTCTGGATATTATAATCAGAGA----GTGTTCG 2357 Query 33215 ----TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTC 33270 || ||||| || || ||| ||| |||| |||||| || || | || || ||||| Sbjct 2356 ACCATCTTCCAACTGTTTGCCAGCAAAGATTAGACGTTGTTGATCTGGAGGAATTCCTTC 2297 Query 33271 TTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGT 33330 ||| || |||| ||| || ||| || ||||| |||| || || ||||| Sbjct 2296 TTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGAAGGTTCGACCTCAAGAGT 2237 Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || || ||||| || ||||| || ||||| |||||||| Sbjct 2236 GATGGTCTTACCCGTGAGGGTTTTAACAAAAATCTGCATGTT 2195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318701945408754