Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq4404 120 3e-22 >seq4404 Length=3800 Score = 120 bits (132), Expect = 3e-22 Identities = 311/469 (66%), Gaps = 4/469 (1%) Strand=Plus/Minus Query 12842 TTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTT 12901 || ||||| ||| ||| ||||||||||| ||| |||| || |||||||| || || Sbjct 3046 TTAGACATTACACCCATGCGTTGATATTCGCCTACTTTTTTCTCGAAAAAGTTCGTCTTG 2987 Query 12902 CCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTA 12961 || || | |||||| |||||| || ||| ||||| || | ||| ||||| Sbjct 2986 CCGTCCAGCGAAATCAATTCCATGAATGTGAATGGATTCTTTGTGTTGTAG-ATTTTGCC 2928 Query 12962 CAC-CCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC 13020 ||| || | ||| | || | | ||||| |||||||| || || | ||| | | Sbjct 2927 CACGCCGAGTTCAACTAGTAGGCGATCAGCGACAAACTCAATATATTCCGACATCAGTTT 2868 Query 13021 ACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATC 13080 ||| ||||| || || | || || |||| || || || || || | | ||||| | Sbjct 2867 ACAATTCATGCCAATCAGGTTAACCGGCAATGCATCGGTCAAGAATTCCTGCTCTATTTT 2808 Query 13081 AACTGCTTCGATAACTATGTCTCTTATTACGTTCTCT-AATGGAGGATTTGATAGATGCT 13139 ||||| || || || || || |||| ||| | |||| | | | ||| | Sbjct 2807 GACTGCCTCCGAAATGATTTC-AATAATACGCTCTTTGGTTGGACGCTGCACCAAATGAT 2749 Query 13140 TAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTG 13199 ||||| | | ||||| |||||||| || |||||||| | |||| || || | Sbjct 2748 GGAACATAAGAACAGCAAAGTCACAGTGTAAACCTTCATCACGCGAAATTAATTCATTGG 2689 Query 13200 AAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAAC 13259 | ||||||| ||| |||||||| || ||||| || | |||||| || | ||||| | Sbjct 2688 AGAATGTTAAACCAGGCATAAGGCCACGTTTCTTCAGCCAAAAGATGGACGCAAAACTGC 2629 Query 13260 CCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACC 13308 | ||| ||||| || || || || ||||| || || | || ||||| Sbjct 2628 CACTAAAGAATATGCCCTCGACCGCAGCAAAGGCAATAATTCTCTCACC 2580 Score = 114 bits (126), Expect = 1e-20 Identities = 185/266 (70%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 13421 ATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGG 13480 ||||| || || || || | |||||||||||| || || | ||||||||| || |||||| Sbjct 2399 ATATAGGTGTCGATTAAAACGCTATACATTTCGGAGTGCACATTTTCCATGGCAATTTGG 2340 Query 13481 AAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAG 13540 || ||||| || || | ||||| | || |||||||| | || | || | || Sbjct 2339 AAGCCATAGAAGCAACGTGCCTCAGTCACTTGAACTTCTTGGCTGAAACGCTCGACCAAA 2280 Query 13541 TTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAtttt 13600 ||||| || || || || || ||||||||| ||||| | | |||| || || | Sbjct 2279 TTTTCATTCACAATGCCATCGGAAGCAGCAAAGAAAGCCAACACGTGCGATATGAAATGA 2220 Query 13601 ttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCA 13660 ||||| || | | ||| |||||||| || || || || | |||||| |||||| Sbjct 2219 CGCTCGTTATCAGTAAGCTTAGCCCAATCTGTCAAGTCCTTCGACAGATCTACTTCCTCA 2160 Query 13661 ACGGTCCAAAAAGAAGCAACAGCCTT 13686 || ||||| || || || | ||||| Sbjct 2159 ACTGTCCAGAATGATGCCTCTGCCTT 2134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430880116159146