Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq4404 120 3e-22
>seq4404
Length=3800
Score = 120 bits (132), Expect = 3e-22
Identities = 311/469 (66%), Gaps = 4/469 (1%)
Strand=Plus/Minus
Query 12842 TTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTT 12901
|| ||||| ||| ||| ||||||||||| ||| |||| || |||||||| || ||
Sbjct 3046 TTAGACATTACACCCATGCGTTGATATTCGCCTACTTTTTTCTCGAAAAAGTTCGTCTTG 2987
Query 12902 CCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTA 12961
|| || | |||||| |||||| || ||| ||||| || | ||| |||||
Sbjct 2986 CCGTCCAGCGAAATCAATTCCATGAATGTGAATGGATTCTTTGTGTTGTAG-ATTTTGCC 2928
Query 12962 CAC-CCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC 13020
||| || | ||| | || | | ||||| |||||||| || || | ||| | |
Sbjct 2927 CACGCCGAGTTCAACTAGTAGGCGATCAGCGACAAACTCAATATATTCCGACATCAGTTT 2868
Query 13021 ACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATC 13080
||| ||||| || || | || || |||| || || || || || | | ||||| |
Sbjct 2867 ACAATTCATGCCAATCAGGTTAACCGGCAATGCATCGGTCAAGAATTCCTGCTCTATTTT 2808
Query 13081 AACTGCTTCGATAACTATGTCTCTTATTACGTTCTCT-AATGGAGGATTTGATAGATGCT 13139
||||| || || || || || |||| ||| | |||| | | | ||| |
Sbjct 2807 GACTGCCTCCGAAATGATTTC-AATAATACGCTCTTTGGTTGGACGCTGCACCAAATGAT 2749
Query 13140 TAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTG 13199
||||| | | ||||| |||||||| || |||||||| | |||| || || |
Sbjct 2748 GGAACATAAGAACAGCAAAGTCACAGTGTAAACCTTCATCACGCGAAATTAATTCATTGG 2689
Query 13200 AAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAAC 13259
| ||||||| ||| |||||||| || ||||| || | |||||| || | ||||| |
Sbjct 2688 AGAATGTTAAACCAGGCATAAGGCCACGTTTCTTCAGCCAAAAGATGGACGCAAAACTGC 2629
Query 13260 CCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACC 13308
| ||| ||||| || || || || ||||| || || | || |||||
Sbjct 2628 CACTAAAGAATATGCCCTCGACCGCAGCAAAGGCAATAATTCTCTCACC 2580
Score = 114 bits (126), Expect = 1e-20
Identities = 185/266 (70%), Gaps = 0/266 (0%)
Strand=Plus/Minus
Query 13421 ATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGG 13480
||||| || || || || | |||||||||||| || || | ||||||||| || ||||||
Sbjct 2399 ATATAGGTGTCGATTAAAACGCTATACATTTCGGAGTGCACATTTTCCATGGCAATTTGG 2340
Query 13481 AAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAG 13540
|| ||||| || || | ||||| | || |||||||| | || | || | ||
Sbjct 2339 AAGCCATAGAAGCAACGTGCCTCAGTCACTTGAACTTCTTGGCTGAAACGCTCGACCAAA 2280
Query 13541 TTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAtttt 13600
||||| || || || || || ||||||||| ||||| | | |||| || || |
Sbjct 2279 TTTTCATTCACAATGCCATCGGAAGCAGCAAAGAAAGCCAACACGTGCGATATGAAATGA 2220
Query 13601 ttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCA 13660
||||| || | | ||| |||||||| || || || || | |||||| ||||||
Sbjct 2219 CGCTCGTTATCAGTAAGCTTAGCCCAATCTGTCAAGTCCTTCGACAGATCTACTTCCTCA 2160
Query 13661 ACGGTCCAAAAAGAAGCAACAGCCTT 13686
|| ||||| || || || | |||||
Sbjct 2159 ACTGTCCAGAATGATGCCTCTGCCTT 2134
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430880116159146
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |