Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq17788 197 3e-45
seq489 140 7e-28
seq12041 136 9e-27
seq4404 109 1e-18
>seq17788
Length=7208
Score = 197 bits (218), Expect = 3e-45
Identities = 169/209 (81%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 104356 ATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTG 104415
||| || || ||||||||||| |||||||| ||||| || |||| ||| ||||| | ||
Sbjct 2401 ATGCAAAGTCGATTCTTTCTGGATATTATAATCAGAGAGTGTTCGACCATCTTCCAACTG 2342
Query 104416 TTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT 104475
||| |||||||| ||||| | |||||||| ||||| ||||||||||| |||||||||||
Sbjct 2341 TTTGCCAGCAAAGATTAGACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTT 2282
Query 104476 TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535
||||| |||||||| | || || |||||| ||||| || || || |||||||| ||
Sbjct 2281 GGCTTTGACATTTTCGATAGTGTCCGAAGGTTCGACCTCAAGAGTGATGGTCTTACCCGT 2222
Query 104536 AAGTGTTTTTACAAATATCTGCATTTTGT 104564
|| ||||| ||||| |||||||| ||||
Sbjct 2221 GAGGGTTTTAACAAAAATCTGCATGTTGT 2193
>seq489
Length=77466
Score = 140 bits (154), Expect = 7e-28
Identities = 160/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
||||| | ||| | || || || || ||||| || ||||| || || || | || |||
Sbjct 4409 AGTACCAAATGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCATCT 4468
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| ||||| || || ||||| || || | |||||| || || || || || ||||| |||
Sbjct 4469 TCCAGTTGCTTGCCGGCAAAGATCAGACGCTGTTGGTCTGGGGGAATGCCCTCTTTGTCC 4528
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|| ||||| || || ||||| || | ||| || ||| || ||||| | ||||| |||
Sbjct 4529 TGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCAACCTCCAAGGTAATGGTC 4588
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
||||| || || ||||| || ||||||||||||||
Sbjct 4589 TTACCGGTGAGAGTTTTGACGAATATCTGCATTTT 4623
>seq12041
Length=12732
Score = 136 bits (150), Expect = 9e-27
Identities = 210/300 (70%), Gaps = 0/300 (0%)
Strand=Plus/Minus
Query 238577 AACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCA 238636
|||||||||| ||||||| | || ||| | ||| | ||||| || ||||||||
Sbjct 5061 AACTCACGATGATTTATGGAACGCTGCACAGTTGCAACTTGTAAGCGAAGCTAAAATGCA 5002
Query 238637 TAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGA 238696
| | || || || ||||||||||| |||||||||||||||||| | | | || || |
Sbjct 5001 TGGCTTTTTGCGCATGTATTGGGCAAAAAAGATACTTGAATGGGCAGAAACGCCGGAGCA 4942
Query 238697 AGCTCTTAGATATAGTATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCTAA 238756
||| | ||| ||| || || ||||| || | || || | |||||| ||
Sbjct 4941 GGCTTTGGAATACGCTATACTGCTTAATGATAAGTATAGCTTAGATGGAAGGGATCCGAA 4882
Query 238757 CGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACACGATAGGGCATGGTCTGAGAG 238816
|| ||||| ||||| |||||||| || |||| |||| || | |||| | |||||
Sbjct 4881 TGGTTACGTGGGTTGCATGTGGTCCATTGGTGGTATACATGACCAAGGATGGGCCGAGAG 4822
Query 238817 ACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGGAACTAAGAAAAAATTTGATGT 238876
||| | ||||| ||||| | || ||||||||| | ||| |||| ||| || |||||
Sbjct 4821 GCCTGTCTTTGGCAAAGTGCGCTATATGAATTATCAGGGATGTAAGCGAAAGTTCGATGT 4762
>seq4404
Length=3800
Score = 109 bits (120), Expect = 1e-18
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 269139 TTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGT 269198
|||| ||||| || || || || ||||||||| || |||||| | |||||||||
Sbjct 2593 TTGCCTTTGCTGCGGTCGAGGGCATATTCTTTAGTGGCAGTTTTGCGTCCATCTTTTGGC 2652
Query 269199 TGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACG 269258
|||||||| | ||||||||||| || ||||| ||||| || ||||| || | || |
Sbjct 2653 TGAAGAAACGTGGCCTTATGCCTGGTTTAACATTCTCCAATGAATTAATTTCGCGTGATG 2712
Query 269259 AAGGTTTACACTGCGACTTCGCT 269281
||||||||||||| ||||| |||
Sbjct 2713 AAGGTTTACACTGTGACTTTGCT 2735
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151111128617884
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |