Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq17788 197 3e-45 seq489 140 7e-28 seq12041 136 9e-27 seq4404 109 1e-18 >seq17788 Length=7208 Score = 197 bits (218), Expect = 3e-45 Identities = 169/209 (81%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 104356 ATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTG 104415 ||| || || ||||||||||| |||||||| ||||| || |||| ||| ||||| | || Sbjct 2401 ATGCAAAGTCGATTCTTTCTGGATATTATAATCAGAGAGTGTTCGACCATCTTCCAACTG 2342 Query 104416 TTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT 104475 ||| |||||||| ||||| | |||||||| ||||| ||||||||||| ||||||||||| Sbjct 2341 TTTGCCAGCAAAGATTAGACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTT 2282 Query 104476 TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 ||||| |||||||| | || || |||||| ||||| || || || |||||||| || Sbjct 2281 GGCTTTGACATTTTCGATAGTGTCCGAAGGTTCGACCTCAAGAGTGATGGTCTTACCCGT 2222 Query 104536 AAGTGTTTTTACAAATATCTGCATTTTGT 104564 || ||||| ||||| |||||||| |||| Sbjct 2221 GAGGGTTTTAACAAAAATCTGCATGTTGT 2193 >seq489 Length=77466 Score = 140 bits (154), Expect = 7e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 ||||| | ||| | || || || || ||||| || ||||| || || || | || ||| Sbjct 4409 AGTACCAAATGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCATCT 4468 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || ||||| || || ||||| || || | |||||| || || || || || ||||| ||| Sbjct 4469 TCCAGTTGCTTGCCGGCAAAGATCAGACGCTGTTGGTCTGGGGGAATGCCCTCTTTGTCC 4528 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || ||||| || | ||| || ||| || ||||| | ||||| ||| Sbjct 4529 TGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCAACCTCCAAGGTAATGGTC 4588 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || ||||| || |||||||||||||| Sbjct 4589 TTACCGGTGAGAGTTTTGACGAATATCTGCATTTT 4623 >seq12041 Length=12732 Score = 136 bits (150), Expect = 9e-27 Identities = 210/300 (70%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 238577 AACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCA 238636 |||||||||| ||||||| | || ||| | ||| | ||||| || |||||||| Sbjct 5061 AACTCACGATGATTTATGGAACGCTGCACAGTTGCAACTTGTAAGCGAAGCTAAAATGCA 5002 Query 238637 TAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGA 238696 | | || || || ||||||||||| |||||||||||||||||| | | | || || | Sbjct 5001 TGGCTTTTTGCGCATGTATTGGGCAAAAAAGATACTTGAATGGGCAGAAACGCCGGAGCA 4942 Query 238697 AGCTCTTAGATATAGTATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCTAA 238756 ||| | ||| ||| || || ||||| || | || || | |||||| || Sbjct 4941 GGCTTTGGAATACGCTATACTGCTTAATGATAAGTATAGCTTAGATGGAAGGGATCCGAA 4882 Query 238757 CGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACACGATAGGGCATGGTCTGAGAG 238816 || ||||| ||||| |||||||| || |||| |||| || | |||| | ||||| Sbjct 4881 TGGTTACGTGGGTTGCATGTGGTCCATTGGTGGTATACATGACCAAGGATGGGCCGAGAG 4822 Query 238817 ACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGGAACTAAGAAAAAATTTGATGT 238876 ||| | ||||| ||||| | || ||||||||| | ||| |||| ||| || ||||| Sbjct 4821 GCCTGTCTTTGGCAAAGTGCGCTATATGAATTATCAGGGATGTAAGCGAAAGTTCGATGT 4762 >seq4404 Length=3800 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 269139 TTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGT 269198 |||| ||||| || || || || ||||||||| || |||||| | ||||||||| Sbjct 2593 TTGCCTTTGCTGCGGTCGAGGGCATATTCTTTAGTGGCAGTTTTGCGTCCATCTTTTGGC 2652 Query 269199 TGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACG 269258 |||||||| | ||||||||||| || ||||| ||||| || ||||| || | || | Sbjct 2653 TGAAGAAACGTGGCCTTATGCCTGGTTTAACATTCTCCAATGAATTAATTTCGCGTGATG 2712 Query 269259 AAGGTTTACACTGCGACTTCGCT 269281 ||||||||||||| ||||| ||| Sbjct 2713 AAGGTTTACACTGTGACTTTGCT 2735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151111128617884