Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq6588 122 5e-23 seq1559 102 5e-17 >seq6588 Length=14732 Score = 122 bits (134), Expect = 5e-23 Identities = 381/573 (66%), Gaps = 19/573 (3%) Strand=Plus/Plus Query 8138 TCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTG 8197 || || ||||||||||||| ||||| | | ||||||| |||| || || || Sbjct 5177 TCATCACCATGCAGCAGATCCGCCAGCGGGTGCTTGTCATGCACGTTCGCTGCCGTCACC 5236 Query 8198 ACCAGGCTGTGGGTCAGGCCACTCTTGGC-ATCGACACCAATGTGGGCCTTCATGCCAAA 8256 ||| |||||| ||| ||| | | ||| |||||| || ||||| |||||||||||| Sbjct 5237 ACCGCACTGTGGCTCAATCCAGT-TCGGCTATCGACTCCGATGTGAATCTTCATGCCAAA 5295 Query 8257 GTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTT--TG 8314 | ||| || | |||||| ||||| |||||||| || || || |||| |||| | Sbjct 5296 GAACCATTGCTGGCCTTTACGCGTCTGGTGCATCTCAGGGTCTCG-TGCT-TTCTTGGCG 5353 Query 8315 TTCTTGGTCGAGCTGGGTGCCTCAATGATGGTGGCATCGACCAAGGTGCC-TTG--AGTC 8371 || ||||| || ||||| || ||||||||||||| || || | |||||| || || Sbjct 5354 TTTTTGGTTGAACTGGGCGCGCCAATGATGGTGGCGTCCACGATGGTGCCGGTGCCGATC 5413 Query 8372 ATCATGACGC-CTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGGCGGGCCAG 8430 ||| | ||| || || || | || | | | |||| | ||| Sbjct 5414 TTCAGGCCGCTCTCCT--GGATGACTTGCCCCACCTTGGC--AAACAGTGCCTCACCCAA 5469 Query 8431 TTGATGCTGCTCCAGCAGGTGGCGGAAATTCATGATGGTGGTGCGGTCCGGCAAG-GCGC 8489 || |||| ||||||||| |||| || ||| | ||||||| || || | | || | Sbjct 5470 CTGGTGCTTCTCCAGCAGTCGGCGAAACCTCAACAGTGTGGTGCCATCGGGTACGCGCTC 5529 Query 8490 TATCC--AGGGATAACCGGGCAAACAGACGCATGGAGGCGATTTCGTACAGAGCATCTTC 8547 || ||| | | |||| | |||| | | | || |||||||||||| Sbjct 5530 ACGCCCTAGGTCAATGCCCACAAAGCGTCGCAATGCCGTACTGTCCAGCAGAGCATCTTC 5589 Query 8548 CATCGCGCCATCGCTCAGGTTGTACCAATGCTGCATGCAGTGAATGCGTAGCATGGTTTC 8607 || | || ||||||| |||||||||||| ||| ||||| |||||| ||| Sbjct 5590 GCAAGCTTCGTCTGCCAGGTTGAACCAATGCTGCACAAAGTACATGCGCAGCATGCGTTC 5649 Query 8608 CAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTC-CA 8666 || | || | |||||| ||||||||||||| || |||||| |||||||| || Sbjct 5650 AAGGCCAATGGGCGGGCGGCCACTACCAGCCTTGGGATAGTGCGGCTCAATGACTTCGCA 5709 Query 8667 CCATGTTTTGCCATGGCAGAATCTGCTCCATGC 8699 | | | |||||||||| ||||| ||||||| Sbjct 5710 CAAAG-ACTGCCATGGCACGATCTGATCCATGC 5741 Score = 95.1 bits (104), Expect = 7e-15 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 8227 ATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATG 8286 |||||| || ||||| |||||||||||||||||| | | ||||| |||||| |||| || Sbjct 12855 ATCGACGCCTATGTGCGCCTTCATGCCAAAGTGCTATTCGTTGCCCTTCTTGCTCTGGTG 12796 Query 8287 CATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGAGCTGGGTGCCTCAATGATGGT 8346 ||||| |||| || | |||||| | ||| | | ||| ||||| |||||| | Sbjct 12795 CATCTTGGGATTTCGGGCGAGGTCTTTGCTTTTGCTTGGGCTTGGTGCTGCAATGAGCCT 12736 Query 8347 GGCATCGACCAAGGTGC 8363 | ||||||||| |||| Sbjct 12735 GACATCGACCACAGTGC 12719 >seq1559 Length=191813 Score = 102 bits (112), Expect = 5e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 8144 CCATGCAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGG 8203 |||||||||| || |||| | | ||||||| || | || || || ||| | Sbjct 26775 CCATGCAGCATATCCGCCAGTGGGTGCTTGTCATGCGCGCTCGCTGCTGTCACCACCGCG 26834 Query 8204 CTGTGGGTCAGGCCACTCTTGGC-ATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCA 8262 |||||| |||| || | | ||| |||||| || ||||| ||||||||||||| | | Sbjct 26835 CTGTGGCTCAGCCCTGT-TCGGCTATCGACTCCGATGTGAATCTTCATGCCAAAGAACTA 26893 Query 8263 CTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGT 8322 || | ||| || ||||| ||||| || || || ||| || | | |||||| || Sbjct 26894 CTTCTGGCCCTTGCACGTCTGGTGCATTTCGGGGTCTCGTGCCTTCAGCTCGTTCTTCGT 26953 Query 8323 CGAGCTGGGTGCCTCAATGATGGTGGCATCGACCAAGGTG 8362 || ||||| || |||||||||||||||||||| | |||| Sbjct 26954 TGAACTGGGCGCGTCAATGATGGTGGCATCGACGATGGTG 26993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303163234042833