Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_005856.1
Length=94800
Score E
Sequences producing significant alignments: (Bits) Value
seq6588 122 5e-23
seq1559 102 5e-17
>seq6588
Length=14732
Score = 122 bits (134), Expect = 5e-23
Identities = 381/573 (66%), Gaps = 19/573 (3%)
Strand=Plus/Plus
Query 8138 TCCTCTCCATGCAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTG 8197
|| || ||||||||||||| ||||| | | ||||||| |||| || || ||
Sbjct 5177 TCATCACCATGCAGCAGATCCGCCAGCGGGTGCTTGTCATGCACGTTCGCTGCCGTCACC 5236
Query 8198 ACCAGGCTGTGGGTCAGGCCACTCTTGGC-ATCGACACCAATGTGGGCCTTCATGCCAAA 8256
||| |||||| ||| ||| | | ||| |||||| || ||||| ||||||||||||
Sbjct 5237 ACCGCACTGTGGCTCAATCCAGT-TCGGCTATCGACTCCGATGTGAATCTTCATGCCAAA 5295
Query 8257 GTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTT--TG 8314
| ||| || | |||||| ||||| |||||||| || || || |||| |||| |
Sbjct 5296 GAACCATTGCTGGCCTTTACGCGTCTGGTGCATCTCAGGGTCTCG-TGCT-TTCTTGGCG 5353
Query 8315 TTCTTGGTCGAGCTGGGTGCCTCAATGATGGTGGCATCGACCAAGGTGCC-TTG--AGTC 8371
|| ||||| || ||||| || ||||||||||||| || || | |||||| || ||
Sbjct 5354 TTTTTGGTTGAACTGGGCGCGCCAATGATGGTGGCGTCCACGATGGTGCCGGTGCCGATC 5413
Query 8372 ATCATGACGC-CTGCTTCGGCCAGCCAGCGATTGATGGTCTTGAACAATTGGCGGGCCAG 8430
||| | ||| || || || | || | | | |||| | |||
Sbjct 5414 TTCAGGCCGCTCTCCT--GGATGACTTGCCCCACCTTGGC--AAACAGTGCCTCACCCAA 5469
Query 8431 TTGATGCTGCTCCAGCAGGTGGCGGAAATTCATGATGGTGGTGCGGTCCGGCAAG-GCGC 8489
|| |||| ||||||||| |||| || ||| | ||||||| || || | | || |
Sbjct 5470 CTGGTGCTTCTCCAGCAGTCGGCGAAACCTCAACAGTGTGGTGCCATCGGGTACGCGCTC 5529
Query 8490 TATCC--AGGGATAACCGGGCAAACAGACGCATGGAGGCGATTTCGTACAGAGCATCTTC 8547
|| ||| | | |||| | |||| | | | || ||||||||||||
Sbjct 5530 ACGCCCTAGGTCAATGCCCACAAAGCGTCGCAATGCCGTACTGTCCAGCAGAGCATCTTC 5589
Query 8548 CATCGCGCCATCGCTCAGGTTGTACCAATGCTGCATGCAGTGAATGCGTAGCATGGTTTC 8607
|| | || ||||||| |||||||||||| ||| ||||| |||||| |||
Sbjct 5590 GCAAGCTTCGTCTGCCAGGTTGAACCAATGCTGCACAAAGTACATGCGCAGCATGCGTTC 5649
Query 8608 CAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTC-CA 8666
|| | || | |||||| ||||||||||||| || |||||| |||||||| ||
Sbjct 5650 AAGGCCAATGGGCGGGCGGCCACTACCAGCCTTGGGATAGTGCGGCTCAATGACTTCGCA 5709
Query 8667 CCATGTTTTGCCATGGCAGAATCTGCTCCATGC 8699
| | | |||||||||| ||||| |||||||
Sbjct 5710 CAAAG-ACTGCCATGGCACGATCTGATCCATGC 5741
Score = 95.1 bits (104), Expect = 7e-15
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 8227 ATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATG 8286
|||||| || ||||| |||||||||||||||||| | | ||||| |||||| |||| ||
Sbjct 12855 ATCGACGCCTATGTGCGCCTTCATGCCAAAGTGCTATTCGTTGCCCTTCTTGCTCTGGTG 12796
Query 8287 CATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGAGCTGGGTGCCTCAATGATGGT 8346
||||| |||| || | |||||| | ||| | | ||| ||||| |||||| |
Sbjct 12795 CATCTTGGGATTTCGGGCGAGGTCTTTGCTTTTGCTTGGGCTTGGTGCTGCAATGAGCCT 12736
Query 8347 GGCATCGACCAAGGTGC 8363
| ||||||||| ||||
Sbjct 12735 GACATCGACCACAGTGC 12719
>seq1559
Length=191813
Score = 102 bits (112), Expect = 5e-17
Identities = 156/220 (71%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 8144 CCATGCAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGG 8203
|||||||||| || |||| | | ||||||| || | || || || ||| |
Sbjct 26775 CCATGCAGCATATCCGCCAGTGGGTGCTTGTCATGCGCGCTCGCTGCTGTCACCACCGCG 26834
Query 8204 CTGTGGGTCAGGCCACTCTTGGC-ATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCA 8262
|||||| |||| || | | ||| |||||| || ||||| ||||||||||||| | |
Sbjct 26835 CTGTGGCTCAGCCCTGT-TCGGCTATCGACTCCGATGTGAATCTTCATGCCAAAGAACTA 26893
Query 8263 CTGATTGCCTTTCTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGT 8322
|| | ||| || ||||| ||||| || || || ||| || | | |||||| ||
Sbjct 26894 CTTCTGGCCCTTGCACGTCTGGTGCATTTCGGGGTCTCGTGCCTTCAGCTCGTTCTTCGT 26953
Query 8323 CGAGCTGGGTGCCTCAATGATGGTGGCATCGACCAAGGTG 8362
|| ||||| || |||||||||||||||||||| | ||||
Sbjct 26954 TGAACTGGGCGCGTCAATGATGGTGGCATCGACGATGGTG 26993
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 303163234042833
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |