Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq5254 122 5e-23 >seq5254 Length=91375 Score = 122 bits (134), Expect = 5e-23 Identities = 158/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 3851 ATTATGAAAGATACCGAAGGAAAAGGTGTACATTTTATGATGGCTGACGGTGGGTTCTCG 3910 |||||||| |||| || | || |||||||| | ||||| || || || ||||| Sbjct 5317 ATTATGAAGCATACACCAG---AGGGCGTACATTTCGTTATGGCCGATGGCGGTTTCTCC 5373 Query 3911 GTTGAGGGTCAAGAAAATATGCAAGAAATGTTATCGAAAAAGATGTATTTGTGTCAATGT 3970 |||||||| ||||||||||| |||||||| ||||| || | |||| | ||||| ||| Sbjct 5374 GTTGAGGGACAAGAAAATATACAAGAAATTTTATCAAAGCAATTGTACCTCTGTCAGTGT 5433 Query 3971 TTAATTGCATTGATGATCATACGAATTGGTGGTCATTGTGTTATCAAATTTTTCGATATA 4030 || | ||||||| || |||| | ||| || ||| ||| | |||||||| Sbjct 5434 TTGACGGCATTGAAAATATTACGCACAAATGGAAGTTTTGTATGTAAACTATTCGATATC 5493 Query 4031 TTTACACCTTTTAGTGCTGGTTTAGTGTATTTGATGTA 4068 ||||| || ||||||| ||| | || ||||||||||| Sbjct 5494 TTTACGCCGTTTAGTGTCGGTCTTGTTTATTTGATGTA 5531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276487966311919