Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq6083 127 1e-24 seq13721 122 5e-23 seq12089 118 6e-22 seq8209 116 2e-21 >seq6083 Length=10486 Score = 127 bits (140), Expect = 1e-24 Identities = 89/101 (88%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 11431 ATATAGAATTAATAAAAAATCAAA-TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGC 11489 ||| ||||| || ||||| ||| ||||||||||| |||||||||| |||||||||| Sbjct 9445 ATAAAGAATAAAACAAAAAGGAAACTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGC 9504 Query 11490 GTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||||||| ||||||||||||||||||||| Sbjct 9505 GTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 9545 Score = 116 bits (128), Expect = 2e-21 Identities = 72/78 (92%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 10200 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 10259 Query 11515 CTGAGCTAATGGGCCGTC 11532 ||||||||||||||| || Sbjct 10260 CTGAGCTAATGGGCCCTC 10277 >seq13721 Length=14796 Score = 122 bits (134), Expect = 5e-23 Identities = 78/86 (91%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| | | |||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 10362 AAAAAGTAAGATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 10421 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 10422 GCTCTAACCAACTGAGCTAATGGGCC 10447 Score = 120 bits (132), Expect = 2e-22 Identities = 81/90 (90%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||| |||||| | ||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 7778 AATCAAAAATGGA-TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 7836 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||| ||||||||||||||||||||| Sbjct 7837 GACGCTCTAACCAACTGAGCTAATGGGCCG 7866 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 10301 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 10242 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 10241 CTGAGCTAATGGGCC 10227 >seq12089 Length=7413 Score = 118 bits (130), Expect = 6e-22 Identities = 78/86 (91%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 11445 AAAAATCAAATT-GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| ||| ||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 1918 AAAAATCTTATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 1977 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 1978 GCTCTAACCAACTGAGCTAATGGGCC 2003 >seq8209 Length=11281 Score = 116 bits (128), Expect = 2e-21 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| | | ||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 4303 AAAAAGTTTAGTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 4244 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 4243 GCTCTAACCAACTGAGCTAATGGGCC 4218 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261429141028948