Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq6083 127 1e-24
seq13721 122 5e-23
seq12089 118 6e-22
seq8209 116 2e-21
>seq6083
Length=10486
Score = 127 bits (140), Expect = 1e-24
Identities = 89/101 (88%), Gaps = 1/101 (1%)
Strand=Plus/Plus
Query 11431 ATATAGAATTAATAAAAAATCAAA-TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGC 11489
||| ||||| || ||||| ||| ||||||||||| |||||||||| ||||||||||
Sbjct 9445 ATAAAGAATAAAACAAAAAGGAAACTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGC 9504
Query 11490 GTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530
||||||||||||||||||| |||||||||||||||||||||
Sbjct 9505 GTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 9545
Score = 116 bits (128), Expect = 2e-21
Identities = 72/78 (92%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 10200 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 10259
Query 11515 CTGAGCTAATGGGCCGTC 11532
||||||||||||||| ||
Sbjct 10260 CTGAGCTAATGGGCCCTC 10277
>seq13721
Length=14796
Score = 122 bits (134), Expect = 5e-23
Identities = 78/86 (91%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
||||| | | |||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 10362 AAAAAGTAAGATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 10421
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| ||||||||||||||||||||
Sbjct 10422 GCTCTAACCAACTGAGCTAATGGGCC 10447
Score = 120 bits (132), Expect = 2e-22
Identities = 81/90 (90%), Gaps = 1/90 (1%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
||| |||||| | ||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 7778 AATCAAAAATGGA-TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 7836
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530
|||||||| |||||||||||||||||||||
Sbjct 7837 GACGCTCTAACCAACTGAGCTAATGGGCCG 7866
Score = 114 bits (126), Expect = 7e-21
Identities = 70/75 (93%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 10301 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 10242
Query 11515 CTGAGCTAATGGGCC 11529
|||||||||||||||
Sbjct 10241 CTGAGCTAATGGGCC 10227
>seq12089
Length=7413
Score = 118 bits (130), Expect = 6e-22
Identities = 78/86 (91%), Gaps = 1/86 (1%)
Strand=Plus/Plus
Query 11445 AAAAATCAAATT-GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
||||||| ||| ||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 1918 AAAAATCTTATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 1977
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| ||||||||||||||||||||
Sbjct 1978 GCTCTAACCAACTGAGCTAATGGGCC 2003
>seq8209
Length=11281
Score = 116 bits (128), Expect = 2e-21
Identities = 77/86 (90%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
||||| | | ||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 4303 AAAAAGTTTAGTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 4244
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| ||||||||||||||||||||
Sbjct 4243 GCTCTAACCAACTGAGCTAATGGGCC 4218
Lambda K H
0.638 0.410 0.920
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261429141028948
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |