Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_006635.1 Length=29874 Score E Sequences producing significant alignments: (Bits) Value seq15965 84.2 4e-12 seq305 84.2 4e-12 seq1832 80.6 5e-11 >seq15965 Length=2433 Score = 84.2 bits (92), Expect = 4e-12 Identities = 84/105 (80%), Gaps = 3/105 (3%) Strand=Plus/Plus Query 3732 AGGGGACATCCATTAATTACGTGAGCTCAGAATGAGGGG-GGAGGGGTCCAATGAAATCT 3790 ||||||| ||||| ||||||||||| | | ||| ||||| || ||||| || |||||| Sbjct 653 AGGGGACGTCCATAAATTACGTGAGAT-AAAATTAGGGGAGGGGGGGTTCAGCAAAATCT 711 Query 3791 CACTAAATCTCATCTAAGCCGAGGGGGAGATAATCAAAAATCTCA 3835 ||| |||||||| ||| | |||||||| || |||| | |||||| Sbjct 712 CACCAAATCTCACCTAGGGGGAGGGGGA-ATCATCAGACATCTCA 755 >seq305 Length=56600 Score = 84.2 bits (92), Expect = 4e-12 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 3731 AAGGGGACATCCATTAATTACGTGAGCTCAGAATGAGGGGGGAGGGGTCCAATGAAATCT 3790 |||||||| ||||| ||||||||||| | | ||| ||||| | ||||| || |||||| Sbjct 41187 AAGGGGACGTCCATAAATTACGTGAGATAA-AATTAGGGGAGGGGGGTTCAGGAAAATCT 41129 Query 3791 CACTAAATCTCATCTAAGCCGAGGGGGAGATAATCAAAAATCTCA 3835 ||| |||||||||||| | ||||||| | | ||| | |||||| Sbjct 41128 CACCAAATCTCATCTAGGGGGAGGGGG-GTTCATCGGACATCTCA 41085 >seq1832 Length=6640 Score = 80.6 bits (88), Expect = 5e-11 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 3731 AAGGGGACATCCATTAATTACGTGAGCTCAGAATGAGGGGGGAGGGGTCCAATGAAATCT 3790 |||||||| ||||| ||||||||||| | | | ||||||||||||| || |||||| Sbjct 2126 AAGGGGACGTCCATAAATTACGTGAGATAAATTTAGGGGGGGAGGGGTCTAACTAAATCT 2067 Query 3791 CACTAAATCTCATCTAAGCCGAGGGGG 3817 ||| |||||||| ||| | ||||||| Sbjct 2066 CACCAAATCTCACCTATGGGGAGGGGG 2040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95453122135736