Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_006658.1
Length=30655
Score E
Sequences producing significant alignments: (Bits) Value
seq6087 150 4e-32
seq13991 109 1e-19
seq5978 98.7 2e-16
seq1967 80.6 5e-11
>seq6087
Length=3024
Score = 150 bits (166), Expect = 4e-32
Identities = 287/422 (68%), Gaps = 2/422 (0%)
Strand=Plus/Plus
Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344
|||||||| | ||| |||||||||| ||| | ||||||||| ||||| | | ||||
Sbjct 966 ACATGATCCTGATATATATGCTTCATATTAAGTTCATCTTGTTTGAACATTATAATAAAG 1025
Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404
|||||||| || | || || ||||| ||||| || ||||| |||||||| | ||| ||
Sbjct 1026 TTTGCATTGTCACGAACAAGATGCTTAGGTATGCGAGTATATGTTTGACATAAATAAAAC 1085
Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464
||||| | ||| ||||| ||||| || ||| | ||| || | || ||||| ||
Sbjct 1086 GAGTCAATGTTCTTATGTCGCCCCATACAAAAATACGCTCGAATATTATTTTGTTTCTCG 1145
Query 7465 CAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTTCAGGCTTGATTACA 7524
|| |||||||| || |||||||| | ||||| || || || ||||| | |||
Sbjct 1146 CATGCAACATCATCGAATATCATAACTGAGTTGTTTTTGGCTTCATCAGGGGCTACAACA 1205
Query 7525 GCTTCATGTTCGCTGAATGTGAAGAATCCAATACCATCAATCTGTTTAAGCAGTGTCTCC 7584
||||| || ||| || || | || || || | || ||| | || | |
Sbjct 1206 CTTTCATTCTCAGAGAACGTAAAATAACCCATTCCTTTTATTGAACTAA--TGAGTTTTC 1263
Query 7585 AGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCAAACCTC 7644
| | | | ||| || ||||| | || || || || ||||| ||||| ||||| |
Sbjct 1264 AAGTATTCATATTTCGGTTGACACAAGGATTTGGAATACAGATAGATATTTTCAAATTTA 1323
Query 7645 AAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTCCACAGTTTGATGGC 7704
| |||||||||| |||| | | | || | | || || |||||||| || || |||
Sbjct 1324 AGACCGTTTGGACTCTCAATTAAACTGATCATAACGTTTGTTTTTCCACAATTCGACGGC 1383
Query 7705 CC 7706
||
Sbjct 1384 CC 1385
Score = 80.6 bits (88), Expect = 5e-11
Identities = 145/208 (70%), Gaps = 8/208 (4%)
Strand=Plus/Plus
Query 7943 AATATAATCAACAAGCTCCCACTTGAACTTCACATACCAGGTTATCAGTACTGCGGTCCG 8002
|| |||||| |||| || ||| | ||| | || |||||||||||||||| || || ||
Sbjct 1648 AAAATAATCGACAATCTGCCAGTAGAATTACATATACCAGGTTATCAGTTTTGTGGACCA 1707
Query 8003 GGTACAAA--GTTAGCCAAGAGATTAGCTCGAGGTGATTCAGGTATAAATCCTTTGGACG 8060
|| ||||| | || | | ||||| | |||||| ||| |||||||| || || |
Sbjct 1708 GGAACAAAACATGAGTC--TCGTTTAGCAAG-GGTGATAAAGGAATAAATCCATTAGATG 1764
Query 8061 CTGCGTGTAAGGAACACGATATAGCTTACTCAAAAAATCGTGAAAATTTGGAAGCTCGTC 8120
| || || || |||||||||| ||| || | ||||| || | | |||| || |
Sbjct 1765 CCGCCTGCAAAGAACACGATACAGCATATTTTCAAAATAAGGATATTATGGA---GCGAC 1821
Query 8121 ACGAGGCTGATAAAATTCTTGCTGAGAA 8148
| | |||||||| ||| | || || ||
Sbjct 1822 ATAAAGCTGATAAGATTTTAGCAGAAAA 1849
>seq13991
Length=3638
Score = 109 bits (120), Expect = 1e-19
Identities = 271/403 (67%), Gaps = 14/403 (3%)
Strand=Plus/Minus
Query 5310 AACTCTCGCCACAT--TTTCGTCTTAAGTGTTCTATTGAAACGTTCACATATGGATGCTT 5367
|| ||||||||||| |||| || ||||||| ||||||| | ||| || |||||||
Sbjct 910 AATTCTCGCCACATCATTTCTTC--AAGTGTTTTATTGAATCTCTCAACAATTGATGCTT 853
Query 5368 TGAGATTGCTGAATGTTGAATACAGATTTATCTTGTGCTGCTTCA-TCAGATCTTTGAAT 5426
| || |||| |||| ||||| | || || || | || |||| ||| ||| ||
Sbjct 852 TAAGGCCGCTGTATGTGGAATAGTGGTTAATTTTTTACT-TTTCACATAGAGATTTAAAC 794
Query 5427 TCTTTGTTGTAAAACTCTTTACCCTGATCAACATGGAGATTCTTAGGGATACGACCTTGC 5486
||| | ||| |||| ||||| || | ||| || |||||||| || | ||| || ||
Sbjct 793 TCTCTATTGAAAAATTCTTTTCCATCATCGGTTTGCAGATTCTTGGGTAGACGCCCCTGT 734
Query 5487 TGAAGTA-CAGACTTCATAG---CACTTGTGACATCTACACCACTTTTAGACTTAATTGG 5542
| || | ||| || ||| | ||||| |||||| || |||||| || | |
Sbjct 733 TCAAAAATCAG-CTCCATTGCTTCACTT---ACATCTTTTGCATTTTTAGTTTTCAACGC 678
Query 5543 AACTGCCCAGGCATATTTTGAAAATATATCTATGATTGTAAGCAGATACTTGTATCCTTT 5602
|| |||| || |||| |||||| ||||||| | ||| | || | | ||| |
Sbjct 677 TACACCCCAAGCGAATTTAGAAAATGTATCTATAACTGTCAAAAGGAATCGATGGCCTCT 618
Query 5603 ATTGACTGTTGCATATGGAATCATCTCAACCAAGTCAGCTTGCCAAGTCTCATCGAGACC 5662
|| || || ||| ||| || |||||||| ||||||||| ||||||| ||
Sbjct 617 GTTTGTTGATGAATAATTTCCCATTTCCACCAAGTCTGCTTGCCAATGATCATCGATTCC 558
Query 5663 TCGGATATCAACATGACGACGTTTATAGTTTCTACGAGCTGGT 5705
| ||| ||| | ||||||||| ||||| |||| || |||
Sbjct 557 TTTCATAATAACCCGTCGACGTTTAAAGTTTTTACGTGCAGGT 515
>seq5978
Length=1653
Score = 98.7 bits (108), Expect = 2e-16
Identities = 150/213 (70%), Gaps = 3/213 (1%)
Strand=Plus/Plus
Query 7943 AATATAATCAACAAGCTCCCACTTGAACTTCACATACCAGGTTATCAGTACTGCGGTCCG 8002
|| |||||| |||| || ||| | ||| | ||||||||||||||||||| || || ||
Sbjct 114 AAAATAATCGACAATCTGCCAGTAGAATTACACATACCAGGTTATCAGTTTTGTGGACCA 173
Query 8003 GGTACAAAGTTAGCCAAGAGATTAGCTCGAGGTGATTCAGGTATAAATCCTTTGGACGCT 8062
|| ||||| | | | ||||| | |||||| ||| |||||||| || || ||
Sbjct 174 GGAACAAAACTTGAGTCTCGTTTAGCAAGGGGTGATAAAGGAATAAATCCATTAGATGCC 233
Query 8063 GCGTGTAAGGAACACGATATAGCTTACTCAAAAAATCGTGAAAATTTGGAAGCTCGTCAC 8122
|| || || |||||||||||||| || | ||||| || | | ||| || ||
Sbjct 234 GCCTGCAAAGAACACGATATAGCATATTTTCAAAATAAGGATATTAAGGA---GCGACAT 290
Query 8123 GAGGCTGATAAAATTCTTGCTGAGAAAGCGTGG 8155
| || ||||||||||| || || || || |||
Sbjct 291 AAAGCCGATAAAATTCTAGCGGAAAAGGCTTGG 323
>seq1967
Length=1235
Score = 80.6 bits (88), Expect = 5e-11
Identities = 103/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 7943 AATATAATCAACAAGCTCCCACTTGAACTTCACATACCAGGTTATCAGTACTGCGGTCCG 8002
|| |||||| |||| || ||| | ||| | ||||||||||||||||||| || || ||
Sbjct 186 AAAATAATCGACAATCTGCCAGTAGAATTACACATACCAGGTTATCAGTTTTGTGGACCA 127
Query 8003 GGTACAAAGTTAGCCAAGAGATTAGCTCGAGGTGATTCAGGTATAAATCCTTTGGACGCT 8062
|| ||||| | | | ||||| | |||||| ||| |||||||| || || |
Sbjct 126 GGAACAAAACTTGAGTCTCGTTTAGCAAGGGGTGATAAAGGAATAAATCCATTAGATTCC 67
Query 8063 GCGTGTAAGGAACACGATATAG 8084
|| | || |||||||||||||
Sbjct 66 GCCAGCAAAGAACACGATATAG 45
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 97951744216042
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |