Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq6087 150 4e-32 seq13991 109 1e-19 seq5978 98.7 2e-16 seq1967 80.6 5e-11 >seq6087 Length=3024 Score = 150 bits (166), Expect = 4e-32 Identities = 287/422 (68%), Gaps = 2/422 (0%) Strand=Plus/Plus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 |||||||| | ||| |||||||||| ||| | ||||||||| ||||| | | |||| Sbjct 966 ACATGATCCTGATATATATGCTTCATATTAAGTTCATCTTGTTTGAACATTATAATAAAG 1025 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 |||||||| || | || || ||||| ||||| || ||||| |||||||| | ||| || Sbjct 1026 TTTGCATTGTCACGAACAAGATGCTTAGGTATGCGAGTATATGTTTGACATAAATAAAAC 1085 Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464 ||||| | ||| ||||| ||||| || ||| | ||| || | || ||||| || Sbjct 1086 GAGTCAATGTTCTTATGTCGCCCCATACAAAAATACGCTCGAATATTATTTTGTTTCTCG 1145 Query 7465 CAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTTCAGGCTTGATTACA 7524 || |||||||| || |||||||| | ||||| || || || ||||| | ||| Sbjct 1146 CATGCAACATCATCGAATATCATAACTGAGTTGTTTTTGGCTTCATCAGGGGCTACAACA 1205 Query 7525 GCTTCATGTTCGCTGAATGTGAAGAATCCAATACCATCAATCTGTTTAAGCAGTGTCTCC 7584 ||||| || ||| || || | || || || | || ||| | || | | Sbjct 1206 CTTTCATTCTCAGAGAACGTAAAATAACCCATTCCTTTTATTGAACTAA--TGAGTTTTC 1263 Query 7585 AGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCAAACCTC 7644 | | | | ||| || ||||| | || || || || ||||| ||||| ||||| | Sbjct 1264 AAGTATTCATATTTCGGTTGACACAAGGATTTGGAATACAGATAGATATTTTCAAATTTA 1323 Query 7645 AAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTCCACAGTTTGATGGC 7704 | |||||||||| |||| | | | || | | || || |||||||| || || ||| Sbjct 1324 AGACCGTTTGGACTCTCAATTAAACTGATCATAACGTTTGTTTTTCCACAATTCGACGGC 1383 Query 7705 CC 7706 || Sbjct 1384 CC 1385 Score = 80.6 bits (88), Expect = 5e-11 Identities = 145/208 (70%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 7943 AATATAATCAACAAGCTCCCACTTGAACTTCACATACCAGGTTATCAGTACTGCGGTCCG 8002 || |||||| |||| || ||| | ||| | || |||||||||||||||| || || || Sbjct 1648 AAAATAATCGACAATCTGCCAGTAGAATTACATATACCAGGTTATCAGTTTTGTGGACCA 1707 Query 8003 GGTACAAA--GTTAGCCAAGAGATTAGCTCGAGGTGATTCAGGTATAAATCCTTTGGACG 8060 || ||||| | || | | ||||| | |||||| ||| |||||||| || || | Sbjct 1708 GGAACAAAACATGAGTC--TCGTTTAGCAAG-GGTGATAAAGGAATAAATCCATTAGATG 1764 Query 8061 CTGCGTGTAAGGAACACGATATAGCTTACTCAAAAAATCGTGAAAATTTGGAAGCTCGTC 8120 | || || || |||||||||| ||| || | ||||| || | | |||| || | Sbjct 1765 CCGCCTGCAAAGAACACGATACAGCATATTTTCAAAATAAGGATATTATGGA---GCGAC 1821 Query 8121 ACGAGGCTGATAAAATTCTTGCTGAGAA 8148 | | |||||||| ||| | || || || Sbjct 1822 ATAAAGCTGATAAGATTTTAGCAGAAAA 1849 >seq13991 Length=3638 Score = 109 bits (120), Expect = 1e-19 Identities = 271/403 (67%), Gaps = 14/403 (3%) Strand=Plus/Minus Query 5310 AACTCTCGCCACAT--TTTCGTCTTAAGTGTTCTATTGAAACGTTCACATATGGATGCTT 5367 || ||||||||||| |||| || ||||||| ||||||| | ||| || ||||||| Sbjct 910 AATTCTCGCCACATCATTTCTTC--AAGTGTTTTATTGAATCTCTCAACAATTGATGCTT 853 Query 5368 TGAGATTGCTGAATGTTGAATACAGATTTATCTTGTGCTGCTTCA-TCAGATCTTTGAAT 5426 | || |||| |||| ||||| | || || || | || |||| ||| ||| || Sbjct 852 TAAGGCCGCTGTATGTGGAATAGTGGTTAATTTTTTACT-TTTCACATAGAGATTTAAAC 794 Query 5427 TCTTTGTTGTAAAACTCTTTACCCTGATCAACATGGAGATTCTTAGGGATACGACCTTGC 5486 ||| | ||| |||| ||||| || | ||| || |||||||| || | ||| || || Sbjct 793 TCTCTATTGAAAAATTCTTTTCCATCATCGGTTTGCAGATTCTTGGGTAGACGCCCCTGT 734 Query 5487 TGAAGTA-CAGACTTCATAG---CACTTGTGACATCTACACCACTTTTAGACTTAATTGG 5542 | || | ||| || ||| | ||||| |||||| || |||||| || | | Sbjct 733 TCAAAAATCAG-CTCCATTGCTTCACTT---ACATCTTTTGCATTTTTAGTTTTCAACGC 678 Query 5543 AACTGCCCAGGCATATTTTGAAAATATATCTATGATTGTAAGCAGATACTTGTATCCTTT 5602 || |||| || |||| |||||| ||||||| | ||| | || | | ||| | Sbjct 677 TACACCCCAAGCGAATTTAGAAAATGTATCTATAACTGTCAAAAGGAATCGATGGCCTCT 618 Query 5603 ATTGACTGTTGCATATGGAATCATCTCAACCAAGTCAGCTTGCCAAGTCTCATCGAGACC 5662 || || || ||| ||| || |||||||| ||||||||| ||||||| || Sbjct 617 GTTTGTTGATGAATAATTTCCCATTTCCACCAAGTCTGCTTGCCAATGATCATCGATTCC 558 Query 5663 TCGGATATCAACATGACGACGTTTATAGTTTCTACGAGCTGGT 5705 | ||| ||| | ||||||||| ||||| |||| || ||| Sbjct 557 TTTCATAATAACCCGTCGACGTTTAAAGTTTTTACGTGCAGGT 515 >seq5978 Length=1653 Score = 98.7 bits (108), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 7943 AATATAATCAACAAGCTCCCACTTGAACTTCACATACCAGGTTATCAGTACTGCGGTCCG 8002 || |||||| |||| || ||| | ||| | ||||||||||||||||||| || || || Sbjct 114 AAAATAATCGACAATCTGCCAGTAGAATTACACATACCAGGTTATCAGTTTTGTGGACCA 173 Query 8003 GGTACAAAGTTAGCCAAGAGATTAGCTCGAGGTGATTCAGGTATAAATCCTTTGGACGCT 8062 || ||||| | | | ||||| | |||||| ||| |||||||| || || || Sbjct 174 GGAACAAAACTTGAGTCTCGTTTAGCAAGGGGTGATAAAGGAATAAATCCATTAGATGCC 233 Query 8063 GCGTGTAAGGAACACGATATAGCTTACTCAAAAAATCGTGAAAATTTGGAAGCTCGTCAC 8122 || || || |||||||||||||| || | ||||| || | | ||| || || Sbjct 234 GCCTGCAAAGAACACGATATAGCATATTTTCAAAATAAGGATATTAAGGA---GCGACAT 290 Query 8123 GAGGCTGATAAAATTCTTGCTGAGAAAGCGTGG 8155 | || ||||||||||| || || || || ||| Sbjct 291 AAAGCCGATAAAATTCTAGCGGAAAAGGCTTGG 323 >seq1967 Length=1235 Score = 80.6 bits (88), Expect = 5e-11 Identities = 103/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 7943 AATATAATCAACAAGCTCCCACTTGAACTTCACATACCAGGTTATCAGTACTGCGGTCCG 8002 || |||||| |||| || ||| | ||| | ||||||||||||||||||| || || || Sbjct 186 AAAATAATCGACAATCTGCCAGTAGAATTACACATACCAGGTTATCAGTTTTGTGGACCA 127 Query 8003 GGTACAAAGTTAGCCAAGAGATTAGCTCGAGGTGATTCAGGTATAAATCCTTTGGACGCT 8062 || ||||| | | | ||||| | |||||| ||| |||||||| || || | Sbjct 126 GGAACAAAACTTGAGTCTCGTTTAGCAAGGGGTGATAAAGGAATAAATCCATTAGATTCC 67 Query 8063 GCGTGTAAGGAACACGATATAG 8084 || | || ||||||||||||| Sbjct 66 GCCAGCAAAGAACACGATATAG 45 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97951744216042