Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq4404 172 6e-38
>seq4404
Length=3800
Score = 172 bits (190), Expect = 6e-38
Identities = 351/517 (68%), Gaps = 6/517 (1%)
Strand=Plus/Minus
Query 21121 ATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCC 21180
||| |||||||| |||||||| || | ||||| || ||| || ||||| | ||
Sbjct 3092 ATTGATTTAAAAGTCAGCATCCAAAGTAAAAACGTTGTCTAGACGGTTAGACATTACACC 3033
Query 21181 CATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATAT 21240
||| |||||| || | ||| |||| |||||||| || ||||| || |||| || ||
Sbjct 3032 CATGCGTTGATATTCGCCTACTTTTTTCTCGAAAAAGTTCGTCTTGCCGTCCAGCGAAAT 2973
Query 21241 AGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGA 21300
||||||| || |||||||| | | || | ||||| || |||||
Sbjct 2972 CAATTCCATGAATGTGAATGGATTCTTTGTGTTGTAGATTTTGCCCACGCCGAGTTCAAC 2913
Query 21301 TAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGAT 21360
|| || | ||| || ||||| || ||||||| |||| | || ||||||||| || ||
Sbjct 2912 TAGTAGGCGATCAGCGACAAACTCAATATATTCCGACATCAGTTTACAATTCATGCCAAT 2853
Query 21361 CAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAAT 21420
|| || || || | || | ||||| || | ||||| ||| || || |||
Sbjct 2852 CAGGTTAACCGGCAATGCATCGGTCAAGAATTCCTGCTCTATTTTGACTGCCTCCGAAAT 2793
Query 21421 TATATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCA-AACATG 21479
|| | || || | | | | || | | || || || | ||||| | |||| |
Sbjct 2792 GATTTCAATAATACGCTCTTTGGTTGGACGCTGCACCAAATGATGGAACATAAGAACA-G 2734
Query 21480 CAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGG 21539
|||| ||||| || ||||||||||| | ||||||||||| || ||||||||||| |
Sbjct 2733 CAAAGTCACAGTGTAAACCTTCATCACGCGAAATTAATTCATTGGAGAATGTTAAACCAG 2674
Query 21540 GCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAA--TGCTCCTGAAAAGAAAAT 21597
|||| | || | || || | |||||| || |||||||| ||| || |||||| ||
Sbjct 2673 GCATAAGGCCACGTTTCTTCAGCCAAAAGATGGACGCAAAACTGCCACT--AAAGAATAT 2616
Query 21598 GCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCG 21634
|||||| || |||||||| |||| | || ||||||
Sbjct 2615 GCCCTCGACCGCAGCAAAGGCAATAATTCTCTCACCG 2579
Score = 86.0 bits (94), Expect = 7e-12
Identities = 159/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826
||||||||||| || || | |||||| || || || || || || || || || | ||||
Sbjct 2378 CTATACATTTCGGAGTGCACATTTTCCATGGCAATTTGGAAGCCATAGAAGCAACGTGCC 2319
Query 21827 TCTGAACATTGAACCTC-GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885
|| | |||||| || | | ||| || | |||| |||||||| || || |||||
Sbjct 2318 TCAGTCACTTGAACTTCTTGGCTGAAA-CGCTCGACCAAATTTTCATTCACAATGCCATC 2260
Query 21886 ACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTT 21945
|| ||||| || ||||| | | ||| |||| || |||||||| || | ||
Sbjct 2259 GGAAGCAGCAAAGAAAGCCAACACGTGCGATATGAAATGACGCTCGTTATCAGTAAGCTT 2200
Query 21946 TTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAA 21996
||||||| || || || || | ||||||||| ||| |||||| ||
Sbjct 2199 AGCCCAATCTGTCAAGTCCTTCGACAGATCTACTTCCTCAACTGTCCAGAA 2149
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531771328696520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |