Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq4404 172 6e-38 >seq4404 Length=3800 Score = 172 bits (190), Expect = 6e-38 Identities = 351/517 (68%), Gaps = 6/517 (1%) Strand=Plus/Minus Query 21121 ATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCC 21180 ||| |||||||| |||||||| || | ||||| || ||| || ||||| | || Sbjct 3092 ATTGATTTAAAAGTCAGCATCCAAAGTAAAAACGTTGTCTAGACGGTTAGACATTACACC 3033 Query 21181 CATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATAT 21240 ||| |||||| || | ||| |||| |||||||| || ||||| || |||| || || Sbjct 3032 CATGCGTTGATATTCGCCTACTTTTTTCTCGAAAAAGTTCGTCTTGCCGTCCAGCGAAAT 2973 Query 21241 AGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGA 21300 ||||||| || |||||||| | | || | ||||| || ||||| Sbjct 2972 CAATTCCATGAATGTGAATGGATTCTTTGTGTTGTAGATTTTGCCCACGCCGAGTTCAAC 2913 Query 21301 TAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGAT 21360 || || | ||| || ||||| || ||||||| |||| | || ||||||||| || || Sbjct 2912 TAGTAGGCGATCAGCGACAAACTCAATATATTCCGACATCAGTTTACAATTCATGCCAAT 2853 Query 21361 CAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAAT 21420 || || || || | || | ||||| || | ||||| ||| || || ||| Sbjct 2852 CAGGTTAACCGGCAATGCATCGGTCAAGAATTCCTGCTCTATTTTGACTGCCTCCGAAAT 2793 Query 21421 TATATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCA-AACATG 21479 || | || || | | | | || | | || || || | ||||| | |||| | Sbjct 2792 GATTTCAATAATACGCTCTTTGGTTGGACGCTGCACCAAATGATGGAACATAAGAACA-G 2734 Query 21480 CAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGG 21539 |||| ||||| || ||||||||||| | ||||||||||| || ||||||||||| | Sbjct 2733 CAAAGTCACAGTGTAAACCTTCATCACGCGAAATTAATTCATTGGAGAATGTTAAACCAG 2674 Query 21540 GCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAA--TGCTCCTGAAAAGAAAAT 21597 |||| | || | || || | |||||| || |||||||| ||| || |||||| || Sbjct 2673 GCATAAGGCCACGTTTCTTCAGCCAAAAGATGGACGCAAAACTGCCACT--AAAGAATAT 2616 Query 21598 GCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCG 21634 |||||| || |||||||| |||| | || |||||| Sbjct 2615 GCCCTCGACCGCAGCAAAGGCAATAATTCTCTCACCG 2579 Score = 86.0 bits (94), Expect = 7e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 21767 CTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCC 21826 ||||||||||| || || | |||||| || || || || || || || || || | |||| Sbjct 2378 CTATACATTTCGGAGTGCACATTTTCCATGGCAATTTGGAAGCCATAGAAGCAACGTGCC 2319 Query 21827 TCTGAACATTGAACCTC-GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885 || | |||||| || | | ||| || | |||| |||||||| || || ||||| Sbjct 2318 TCAGTCACTTGAACTTCTTGGCTGAAA-CGCTCGACCAAATTTTCATTCACAATGCCATC 2260 Query 21886 ACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTT 21945 || ||||| || ||||| | | ||| |||| || |||||||| || | || Sbjct 2259 GGAAGCAGCAAAGAAAGCCAACACGTGCGATATGAAATGACGCTCGTTATCAGTAAGCTT 2200 Query 21946 TTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAA 21996 ||||||| || || || || | ||||||||| ||| |||||| || Sbjct 2199 AGCCCAATCTGTCAAGTCCTTCGACAGATCTACTTCCTCAACTGTCCAGAA 2149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531771328696520