Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1169 652 0.0 seq4404 163 4e-35 >seq1169 Length=8375 Score = 652 bits (722), Expect = 0.0 Identities = 1270/1865 (68%), Gaps = 18/1865 (1%) Strand=Plus/Plus Query 61986 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62045 ||||| | || ||||| || | | | ||| || || || |||| ||| |||||||| Sbjct 822 TTGTCTACAGTAAATTGTATAGCATTTGCTGCCGGCTTTGTGCGTAAATAATACATTCCA 881 Query 62046 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62105 ||||| ||||| ||||| ||||| || || || | ||| |||| | || Sbjct 882 GTTTTAAGACCTGCTTTCCATGAATAAAAGTGTATTGAAGTCAATTTACCATAATTTGGT 941 Query 62106 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62165 || || | ||| ||||| | || || ||||| || ||||| ||||| || ||||||||| Sbjct 942 TCGGCGACATGTATATTGAATGACTGGCTTTGGTCAATGAAAGCTCCTCTATCTGCAGCC 1001 Query 62166 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 62224 |||||||| | | ||| | ||| ||||| | ||||||||| || || || | ||| Sbjct 1002 ATTTTTATTGTTGATTTTACAGAAATCTCCCAGACAGTTTTATATAAGTCTCTGAC-ATC 1060 Query 62225 TTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGAT 62281 || |||| |||| ||| ||||| || |||| | || || || |||| || || Sbjct 1061 TTTAGGAATTGTTTCAATATGTTGAATAGAACCACGACTTGACACTATATTATTTTTCAT 1120 Query 62282 CTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTG 62341 ||||||| ||| || | || |||||| | | | | || | ||||| ||||| Sbjct 1121 ATCATCATCCCACAAATCCAATTCAGTTAAATCACGTAATAAATAATGGTTAACAACTTG 1180 Query 62342 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTC 62401 ||| |||||||| || || || | ||||| ||||| || || ||||| | || || Sbjct 1181 AAACTCTCCAGATAAAACCCTTCTGGTGTATATATTTGAAGTGTAGGGTTCAAATGATTC 1240 Query 62402 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATT 62461 ||||||||||| |||||||| || || || || ||||| ||||| || | | ||| Sbjct 1241 ATTATTTCCCATGATTTGAGCTGTAGAAGCTGTAGGCATTGGTGCTACAAGGAGGGAATT 1300 Query 62462 TCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGG 62521 ||| | || || || || ||| |||| ||| ||||| ||| | || || || Sbjct 1301 TCTTACTCCATACTTTTGAATCTTAAGCTTTAATTGTTGCCAATCCCACAAATTCGTTGG 1360 Query 62522 TACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGA--TCCTACATAT 62579 | |||||| || || || || || | ||| |||| Sbjct 1361 TTTTTTTCCCCACATGTCATATTGTAGGATTCCTTTGCTTA--TAGGGCTTCCCTCATAC 1418 Query 62580 GTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAA 62639 || || || || || | ||| ||||| ||||||||||| || ||||| | || |||||| Sbjct 1419 GTCTCATAGGGACCATACTTTTCAGCCAGTTCACAACTTGCTTCTAAGGAACTGTAATAT 1478 Query 62640 ATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTT 62699 || ||||| || || | | ||||| | ||||| ||| ||| | |||||| Sbjct 1479 ATCGTTTCAAAAATTTGTTGATTTAAAAGAAAGGCTTCTTCGCTTTCATAGGGATAACGC 1538 Query 62700 AAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTA 62759 | | ||| | || || || || || ||||| ||||| || ||||| | ||||||| Sbjct 1539 ATTAAAATTAGAGCATCAGCAAAGCCCTGAACGCCAATGCCAATAGGACGATGTCTCAAG 1598 Query 62760 TTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTT 62819 ||||| || ||| ||| | | |||||||||||| || || || |||||||| |||||| Sbjct 1599 TTAGACTTTCGAGCCTCTTGCAAAGGATAATAATTGATGTCAATTATTTTATTTAGATTT 1658 Query 62820 CTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTATT--- 62876 | | || ||| || ||||| | || |||||| || || Sbjct 1659 CGTGTTACTATTTTCGTTACTTCCTTTAACTTTTCGAAATCATATTTTTTTTCCGAGGAC 1718 Query 62877 ACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62936 |||||||| || ||||||| ||||||| ||| || || || | |||| | | | | Sbjct 1719 ACAAACATATTTAAGGCAATCGATGCCAAATTGCATACCGCAATTTCATCTGGTGCAGAA 1778 Query 62937 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 62996 |||| || || || ||||| | |||||| || || || || || | ||||||||| || Sbjct 1779 TATTCTACAATTTCTGTGCATAAATTACTGCATTTAATGGTGCCAACATTTTGTTGGTTG 1838 Query 62997 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63056 || ||| | ||||| | ||| ||| | | || ||||||| |||||||| | |||| | Sbjct 1839 CTTTTTCTATTACATGAATCTTTAAACAACATATATGGAGTGCCAGTTTCTACTTGAGCT 1898 Query 63057 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAG-ATTTGTATCTCCTTTCTCT 63115 || || || | ||| | | | || || ||| | | ||| |||| || Sbjct 1899 TCAATTATAGAAAACCAAAGAGATTGTGCTTTAATTTTTCTACTTGCGCGACCTT-CTTG 1957 Query 63116 TTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACA 63175 ||| ||| | ||| || ||| |||||||| |||||||||| | | ||||| || Sbjct 1958 TTCATATTTTTCATATAACTTTTCAAACTCGTCACCCCAAACATCATGAAGGCCAGGGCA 2017 Query 63176 TTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATC 63235 || || |||||||| | |||||||||| || |||| |||||||||||||| || || Sbjct 2018 TTTATGAGGACACATAAGTGACCACTCTCGATCTTCCTCTACTCGTTTCATAAAAAGGTC 2077 Query 63236 AGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTT 63295 |||||||||||||| ||||| ||| | | ||| ||||| || ||||| ||||| || Sbjct 2078 TGGAATCCAAAGAGCGTAAAATAAATCACGAGCTCTGTGTTCTTCCTTTCCAGTATTTTT 2137 Query 63296 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 63355 ||| ||||| | |||| | | ||| || | |||||| || || || || || || | | Sbjct 2138 TTTTAGATCCAAGAACTCGAAAATGTCTGCATGCCAAGGCTCTAAATAAATAGCAAATGC 2197 Query 63356 TCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 63415 |||||||| || ||||| ||||||| |||| ||| |||||| ||||||| | Sbjct 2198 TCCAGGCCTCTTACCACCTCCTTGATCTACATATCGTGCGACATTATTAAAAACTCTAAG 2257 Query 63416 CATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACG 63475 |||||| | || || || ||| ||||||| || || || || | | || | ||||| Sbjct 2258 CATTGGCACAAGTCCATTCGATGTACCATTAGTTCCCGAAATTGAAGTACCCTTAGCACG 2317 Query 63476 AATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 63535 ||| | || || ||||||||| || || ||| || || | || ||| ||| Sbjct 2318 AATGCAATGAACATTTATACCTATTCCACCGGCAGATTTTGATATCATCGCACATTGTTC 2377 Query 63536 TAACGTGTCATAGATACCCTCTATGCTATCATCGATCA-TGTTAAGTAGAAAACAGCTAG 63594 || | | | | || || ||||| ||| | | || |||||| |||||||| || Sbjct 2378 TACAGATTTAAAAATGCCTTCTATAGAATCCGCTACCATTGTTAA-AAGAAAACATGAAG 2436 Query 63595 ACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATT 63654 | | ||| ||||| | ||| | ||| ||| || ||||| || || ||||| || | Sbjct 2437 ATAGTTGCGGACGATTGGTTGCAGCAGCAAACAAAGTAGGTGATGCATGCGTGAAGTAAC 2496 Query 63655 TTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCT 63713 ||| ||||||||||| || || || || |||| || |||||| || | || || || Sbjct 2497 GTTCCGAAAGTAGATTATAAGTTTCTATTGCTGCATCAATATCCTCACCG-TGTATACCA 2555 Query 63714 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAAC 63773 | || ||||||||||||||||| |||||||| ||| ||||||| ||||||||| || Sbjct 2556 ATCGCAACACGCATTAACATGTGTTGAGGTCTCTCAGCGATCTTTCCGTTTATTTTTAAT 2615 Query 63774 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 63833 || || ||| ||||||||||||||| ||||||||||| || ||| || || |||||| Sbjct 2616 AAATACGATCGTTCCAAAGTTTTAAATCCAAAATAGTTATAACCAAAATCACGGTCGTAA 2675 Query 63834 ATAAT 63838 ||||| Sbjct 2676 ATAAT 2680 Score = 102 bits (112), Expect = 1e-16 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 63965 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATC 64024 ||| |||||||| ||||||||||||||||| || ||||| ||||||| |||||| ||||| Sbjct 6615 TTTCTTTGTTTCTTTGTGTAGATTTGATACTGCAATTCTTGCGGCTAAAATGGCGTAATC 6674 Query 64025 CGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 64078 | || | |||||| || | ||||| ||||| ||||| | | |||| || || Sbjct 6675 TGCGTGATTTGTAGTCAAACTTGCTGCAATTTCAGCTGCTAAATTGTCTAACTC 6728 >seq4404 Length=3800 Score = 163 bits (180), Expect = 4e-35 Identities = 401/601 (67%), Gaps = 8/601 (1%) Strand=Plus/Minus Query 32957 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTG---AGACATAACTCCCATTT 33013 ||||||||||| |||| |||| |||| || ||| | |||||| || ||||| Sbjct 3087 TTTAAAAGTCAGCATCCAAAGTAAAAACGTTGTCTAGACGGTTAGACATTACACCCATGC 3028 Query 33014 TTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTT 33073 ||| ||||| || || ||| |||||||| || || || || |||| || || || Sbjct 3027 GTTGATATTCGCCTACTTTTTTCTCGAAAAAGTTCGTCTTGCCGTCCAGCGAAATCAATT 2968 Query 33074 CCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCA 33133 ||||||| || ||||| | || || ||||| | || | |||| | | Sbjct 2967 CCATGAATGTGAATGGATTCTTTGTGTTGTAGATTTTGCCCACGCCGAGTTCAACTAGTA 2908 Query 33134 ATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTT 33193 | ||| ||||| || || |||||| ||||| || ||||||||| || || || | Sbjct 2907 GGCGATCAGCGACAAACTCAATATATTCCGACATCAGTTTACAATTCATGCCAATCAGGT 2848 Query 33194 TAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAG 33253 |||| || | || | || | ||||| || || || || || || | || || Sbjct 2847 TAACCGGCAATGCATCGGTCAAGAATTCCTGCTCTATTTTGACTGCCTCCGAAATGATTT 2788 Query 33254 ATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCA-AACATGCGAAA 33312 ||| |||| | || | |||| ||||| | ||||| | |||| || || Sbjct 2787 CAATAATACGCTCTTTGGTTGGACGCTGCACCAAATGATGGAACATAAGAACA-GCAAAG 2729 Query 33313 TCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATT 33372 || ||||| | ||| || || | ||||| ||| ||||| || || | || ||||| Sbjct 2728 TCACAGTGTAAACCTTCATCACGCGAAATTAATTCATTGGAGAATGTTAAACCAGGCATA 2669 Query 33373 AGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCT 33432 |||||||| || || |||||||| ||||| || || ||| |||||| || || || Sbjct 2668 AGGCCACGTTTCTTCAGCCAAAAGATGGACGCAAAACTGCCACTAAAGAATATGCCCTCG 2609 Query 33433 ACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTC-ATG-TATCCACTTT 33489 || |||||||||||||||| |||||| || || || | | || ||| ||||| Sbjct 2608 ACCGCAGCAAAGGCAATAATTCTCTCACCGAAATTAGCTGATTTCGATGAAATCCAAGAG 2549 Query 33490 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 33549 | |||||||| ||||| ||| ||| ||||| || || || ||||| || |||||| Sbjct 2548 AGCGCCCAATCAGCCTTGCGTTTAACAGCGGGCATGGTCTCAATTGCATTGAAAAGATAG 2489 Query 33550 T 33550 | Sbjct 2488 T 2488 Score = 138 bits (152), Expect = 1e-27 Identities = 195/274 (71%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 |||| | | ||| || ||||| |||| ||||||||||| || || | ||||| ||||| Sbjct 2406 ATCTCTTATATAGGTGTCGATTAAAACGCTATACATTTCGGAGTGCACATTTTCCATGGC 2347 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 || || || || ||||| || | ||||| || | || |||||| | || || || Sbjct 2346 AATTTGGAAGCCATAGAAGCAACGTGCCTCAGTCACTTGAACTTCTTGGCTGAAACGCTC 2287 Query 33684 CGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 33743 |||||||||||||||| || || || || ||||| || ||||| || || ||| Sbjct 2286 GACCAAATTTTCATTCACAATGCCATCGGAAGCAGCAAAGAAAGCCAACACGTGCGATAT 2227 Query 33744 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTAC 33803 |||| |||| || || ||| |||||| | | || || || | |||||| Sbjct 2226 GAAATGACGCTCGTTATCAGTAAGCTTAGCCCAATCTGTCAAGTCCTTCGACAGATCTAC 2167 Query 33804 TTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 33837 ||| || |||||||| |||||||||||||||||| Sbjct 2166 TTCCTCAACTGTCCAGAATGATGCCTCTGCCTTT 2133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622795566864680