Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq12041 104 2e-17 seq17788 100 3e-16 >seq12041 Length=12732 Score = 104 bits (114), Expect = 2e-17 Identities = 203/300 (68%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 71671 AACGCATGATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTCA 71730 ||| || ||||| ||||||| ||||| ||| || || | || | |||||| || Sbjct 5061 AACTCACGATGATTTATGGAACGCTGCACAGTTGCAACTTGTAAGCGAAGCTAAAATGCA 5002 Query 71731 CGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGCA 71790 || | | |||||||| ||||| |||||||| || || ||| | |||| || ||||| Sbjct 5001 TGGCTTTTTGCGCATGTATTGGGCAAAAAAGATACTTGAATGGGCAGAAACGCCGGAGCA 4942 Query 71791 GGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTAA 71850 ||| | || || |||| || || |||| || || | || || | ||||| || Sbjct 4941 GGCTTTGGAATACGCTATACTGCTTAATGATAAGTATAGCTTAGATGGAAGGGATCCGAA 4882 Query 71851 CGGTTATGTCGGTTGCATGTGGAGCATTTGCGGTCTTCACGATAGAAGCTTTTTAGAACG 71910 ||||| || |||||||||||| |||| | ||| | || || | | | || | Sbjct 4881 TGGTTACGTGGGTTGCATGTGGTCCATTGGTGGTATACATGACCAAGGATGGGCCGAGAG 4822 Query 71911 TCAAGTGTTTGGTAAAATTCGCTATATGAATCGTAATGGTTGCGAACGCAAGTTCAATGT 71970 | || ||||| ||| | |||||||||||| | | || || | || |||||| |||| Sbjct 4821 GCCTGTCTTTGGCAAAGTGCGCTATATGAATTATCAGGGATGTAAGCGAAAGTTCGATGT 4762 >seq17788 Length=7208 Score = 100 bits (110), Expect = 3e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 26764 ACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAAT 26823 |||| ||||| | ||||| ||||| | || || || | ||||| | || | ||| Sbjct 2193 ACAACATGCAGATTTTTGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAAC 2252 Query 26824 CAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCG 26883 | ||||| ||||| | |||||| |||||| ||||||||||| || ||||| | Sbjct 2253 CTTCGGACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAG 2312 Query 26884 ATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACT 26943 |||||||| | || || | | |||||||| | ||||||| | ||| || || | Sbjct 2313 ATCAACAACGTCTAATCTTTGCTGGCAAACAGTTGGAAGATGGTCGAACACTCTCTGATT 2372 Query 26944 ATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 |||| || || |||||||| ||| | ||| |||| || | ||| | || ||| Sbjct 2373 ATAATATCCAGAAAGAATCGACTTTGCATTTGGTTTTGCGCCTTCGTGGTGGA 2425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478545887588560