Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1169 221 3e-52 seq6120 140 8e-28 seq4404 100 7e-16 >seq1169 Length=8375 Score = 221 bits (244), Expect = 3e-52 Identities = 564/854 (66%), Gaps = 6/854 (1%) Strand=Plus/Minus Query 363454 CCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCG 363513 || || || ||||||||||||||||| |||||||| || | |||| ||||||| || Sbjct 2584 CCTCAACACATGTTAATGCGTGTTGCGATTGGTATACACGGTGAGGATATTGATGCAGCA 2525 Query 363514 ATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCCACGCCAACAATGTAC 363573 || ||||| ||||| || || | ||| |||||||| || | || || ||| Sbjct 2524 ATAGAAACTTATAATCTACTTTCGGAACGTTACTTCACGCATGCATCACCTACTTTGTTT 2465 Query 363574 AATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGAT 363633 ||||| ||| | ||| || | ||||| || |||||| ||| |||| | ||| Sbjct 2464 GCTGCTGCAACCAATCGTCCGCAACTATCTTCATGTTTTCTTTTAACAATGGTAGCGGAT 2405 Query 363634 TCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGC 363693 || || || || || ||| | | | | | ||||| | || || || ||| || Sbjct 2404 TCTATAGAAGGCATTTTTAAATCTGTAGAACAATGTGCGATGATATCAAAATCTGCCGGT 2345 Query 363694 GGAATTGGTGTATCGATCCACAATG--TTCGTGCACAGAACAGTTACATTCGCGGCACAG 363751 ||||| ||| || || || || ||||||| || | || ||| || || Sbjct 2344 GGAATAGGTATAA--ATGTTCATTGCATTCGTGCTAAGGGTACTTCAATTTCGGGAACTA 2287 Query 363752 GGGGATAC-TCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTAC 363810 || ||| |||||||| || || || |||||| | || ||| | ||| || | || Sbjct 2286 ATGG-TACATCGAATGGACTTGTGCCAATGCTTAGAGTTTTTAATAATGTCGCACGATAT 2228 Query 363811 GTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCAT 363870 || || || || || || ||| | || || |||||||| ||| | |||||| ||| Sbjct 2227 GTAGATCAAGGAGGTGGTAAGAGGCCTGGAGCATTTGCTATTTATTTAGAGCCTTGGCAT 2168 Query 363871 GCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCA 363930 || || ||||| ||||| | || || ||||| || ||||| || ||| | || Sbjct 2167 GCAGACATTTTCGAGTTCTTGGATCTAAAAAAAAATACTGGAAAGGAAGAACACAGAGCT 2108 Query 363931 CGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGT 363990 |||||| | || || || |||||| || | |||| ||||||||| || || |||| || | Sbjct 2107 CGTGATTTATTTTACGCTCTTTGGATTCCAGACCTTTTTATGAAACGAGTAGAGGAAGAT 2048 Query 363991 AAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGAC 364050 | |||||||| | || || || |||| || || ||| ||||| ||||||||| Sbjct 2047 CGAGAGTGGTCACTTATGTGTCCTCATAAATGCCCTGGCCTTCATGATGTTTGGGGTGAC 1988 Query 364051 GACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCC 364110 || | || |||| ||||| |||||| || || || ||| | |||| Sbjct 1987 GAGTTTGAAAAGTTATATGAAAAATATGAACAAGAAGGTCGCGCAAGTAGAAAAATTAAA 1928 Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 ||||| || |||||| | || || || | || | || || || || || |||||| Sbjct 1927 GCACAATCTCTTTGGTTTTCTATAATTGAAGCTCAAGTAGAAACTGGCACTCCATATATG 1868 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 |||| |||||||| || || | || |||||| || | |||| || ||| | Sbjct 1867 TTGTTTAAAGATTCATGTAATAGAAAAAGCAACCAACAAAATGTTGGCACCATTAAATGC 1808 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAAC 364290 || || |||| || || ||| | ||||| | || || || || | ||| ||||| || Sbjct 1807 AGTAATTTATGCACAGAAATTGTAGAATATTCTGCACCAGATGAAATTGCGGTATGCAAT 1748 Query 364291 CTTGCGTCGATCGC 364304 | || ||||| || Sbjct 1747 TTGGCATCGATTGC 1734 >seq6120 Length=7451 Score = 140 bits (154), Expect = 8e-28 Identities = 406/608 (67%), Gaps = 18/608 (3%) Strand=Plus/Plus Query 111316 TTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGGT 111375 ||||| | | ||||||||||| | |||| | | | ||||| ||||| |||||| Sbjct 4440 TTCCATTATTGACAACAAAGCGCGTCTTTTGGCGTGCAGTCGTCGAGGAACTGTTGTGGT 4499 Query 111376 TTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCA-AAAAATGTAAAAATTTGGGAT 111434 || | | || | ||| | || || | |||||| | |||||| || | ||||||||| Sbjct 4500 TTGTGGGTGGCAAAACAGACGCTAA-GCTGTTGCAGGAGAAAAATATACACATTTGGGAT 4558 Query 111435 GGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGA-CAACGAAGAAGGTGA 111493 || || | ||||||| ||| | ||| | ||| | || | || || | || Sbjct 4559 GGCAACAGCACACGTGAATTTTTGGATAAATGCGGTTTCCATGATCGTCGC-GAGGCCGA 4617 Query 111494 TCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGC- 111552 ||| || || || || || ||||||||||| |||||||| || | || || ||| ||| Sbjct 4618 TCTTGGTCCGGTATATGGTTTTCAATGGCGTCACTTTGGCGCCAAATATAAGACC-TGCG 4676 Query 111553 ACGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCAAATTAAGA 111612 |||| ||| ||| || ||| ||||| || | || ||||| | || | Sbjct 4677 ACGATGATTATACCGGACAAGGTGTTGACCAATTGAAGCAAGTGATTGA-AACCATACGC 4735 Query 111613 AC-AACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCAT-TGGAAAA 111670 || || ||||| |||||| ||||||||| || |||||||| || || | | Sbjct 4736 ACAAATCCAACGGATCGTCGGATTATTATGTCCGCTTGGAACCC-TTTGGATATACCGCA 4794 Query 111671 AATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTA--CACGA----CGGGA 111723 |||||| | |||||||| ||| | | ||| || || || ||| |||| ||| Sbjct 4795 GATGGCATTGCCACCATGCCATTGTCT-TGCTCAATTCTACGTATCAACGACACGCGGTG 4853 Query 111724 TGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATA 111783 | | || ||||| ||||||| || || ||||| ||||| ||||| || ||||| | Sbjct 4854 AGTTGTCTTGCCAGCTGTATCAACGCAGCGCAGATATGGGTCTGGGTGTGCCCTTTAACA 4913 Query 111784 TTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTG 111843 | || || ||||| ||||| | | | || |||||| | || || |||||||| | Sbjct 4914 TCGCCTCGTATGCACTGCTTACGTACATGATAGCTCATGTGACGGGCCTTAAACCGGGAG 4973 Query 111844 AATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTTAAAA 111903 | ||| ||||| | || ||||| ||||| |||| |||||||| || || | || Sbjct 4974 ACTTCGTTCACACGCTTGGCGATGCTCATGTCTACAGTAACCACATAGAACCATTGAAGG 5033 Query 111904 CACAGTTG 111911 ||||||| Sbjct 5034 AACAGTTG 5041 >seq4404 Length=3800 Score = 100 bits (110), Expect = 7e-16 Identities = 298/447 (67%), Gaps = 17/447 (4%) Strand=Plus/Plus Query 22496 TTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCA-TTTTGTG-CAATCTT 22553 ||||||| ||||||| ||| || ||||| |||||| ||| || ||||| | | ||||| Sbjct 2590 TTATTGCCTTTGCTGCGGTCGAGGGCATATTCTTTAGTGG--CAGTTTTGCGTCCATCTT 2647 Query 22554 TTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCG 22613 |||||| || ||||||| ||||||| ||| |||| || || ||||| |||||| || Sbjct 2648 TTGGCTGAAGAAACGTGGCCTTATGCCTGGTTTAACATTCTCCAATGAATTAATTTCGCG 2707 Query 22614 AGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAA 22673 ||||| ||| | || || ||||| ||| | ||| | ||||| | | | | Sbjct 2708 TGATGAAGGTTTACACTGTGACTTTGC-TGT-TCTTATGT-TCCATCATTTGGTGC---A 2761 Query 22674 ACTTCCA---TATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCT 22730 | |||| | || | | |||| || ||| | | ||||| || | || | Sbjct 2762 GCGTCCAACCAAAGAGCGTATTATTGAAATCATTTCGGAGGCAGTCAAAATAGAGCAGGA 2821 Query 22731 ATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTAC 22790 ||| | ||| || || || || | || ||||| || ||| || ||| Sbjct 2822 ATTCTTGACCGATGCATTGCCGGTTAACCTGATTGGCATGAATTGTAAACTGATGTCGGA 2881 Query 22791 ATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGG-TTATGCAAAGCAT-TAT 22848 ||||||| | ||||| || ||||| ||| || || |||||| | ||||| || || Sbjct 2882 ATATATTGAGTTTGTCGCTGATCGCCTACTAGTTGAACTCGGCGTGGGCAAA--ATCTAC 2939 Query 22849 AACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTC 22908 ||| |||||||| || |||||| | ||||| || || || ||||| || || Sbjct 2940 AACACAAAGAATCCATTCACATTCATGGAATTGATTTCGCTGGACGGCAAGACGAACTTT 2999 Query 22909 TTCGAAAAAAGAGTTGGTGAATACCAA 22935 ||||| |||| ||| || ||||| ||| Sbjct 3000 TTCGAGAAAAAAGTAGGCGAATATCAA 3026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303028416127886