Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq1169 221 3e-52
seq6120 140 8e-28
seq4404 100 7e-16
>seq1169
Length=8375
Score = 221 bits (244), Expect = 3e-52
Identities = 564/854 (66%), Gaps = 6/854 (1%)
Strand=Plus/Minus
Query 363454 CCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCG 363513
|| || || ||||||||||||||||| |||||||| || | |||| ||||||| ||
Sbjct 2584 CCTCAACACATGTTAATGCGTGTTGCGATTGGTATACACGGTGAGGATATTGATGCAGCA 2525
Query 363514 ATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCCACGCCAACAATGTAC 363573
|| ||||| ||||| || || | ||| |||||||| || | || || |||
Sbjct 2524 ATAGAAACTTATAATCTACTTTCGGAACGTTACTTCACGCATGCATCACCTACTTTGTTT 2465
Query 363574 AATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGAT 363633
||||| ||| | ||| || | ||||| || |||||| ||| |||| | |||
Sbjct 2464 GCTGCTGCAACCAATCGTCCGCAACTATCTTCATGTTTTCTTTTAACAATGGTAGCGGAT 2405
Query 363634 TCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGC 363693
|| || || || || ||| | | | | | ||||| | || || || ||| ||
Sbjct 2404 TCTATAGAAGGCATTTTTAAATCTGTAGAACAATGTGCGATGATATCAAAATCTGCCGGT 2345
Query 363694 GGAATTGGTGTATCGATCCACAATG--TTCGTGCACAGAACAGTTACATTCGCGGCACAG 363751
||||| ||| || || || || ||||||| || | || ||| || ||
Sbjct 2344 GGAATAGGTATAA--ATGTTCATTGCATTCGTGCTAAGGGTACTTCAATTTCGGGAACTA 2287
Query 363752 GGGGATAC-TCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTAC 363810
|| ||| |||||||| || || || |||||| | || ||| | ||| || | ||
Sbjct 2286 ATGG-TACATCGAATGGACTTGTGCCAATGCTTAGAGTTTTTAATAATGTCGCACGATAT 2228
Query 363811 GTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCAT 363870
|| || || || || || ||| | || || |||||||| ||| | |||||| |||
Sbjct 2227 GTAGATCAAGGAGGTGGTAAGAGGCCTGGAGCATTTGCTATTTATTTAGAGCCTTGGCAT 2168
Query 363871 GCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCA 363930
|| || ||||| ||||| | || || ||||| || ||||| || ||| | ||
Sbjct 2167 GCAGACATTTTCGAGTTCTTGGATCTAAAAAAAAATACTGGAAAGGAAGAACACAGAGCT 2108
Query 363931 CGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGT 363990
|||||| | || || || |||||| || | |||| ||||||||| || || |||| || |
Sbjct 2107 CGTGATTTATTTTACGCTCTTTGGATTCCAGACCTTTTTATGAAACGAGTAGAGGAAGAT 2048
Query 363991 AAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGAC 364050
| |||||||| | || || || |||| || || ||| ||||| |||||||||
Sbjct 2047 CGAGAGTGGTCACTTATGTGTCCTCATAAATGCCCTGGCCTTCATGATGTTTGGGGTGAC 1988
Query 364051 GACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCC 364110
|| | || |||| ||||| |||||| || || || ||| | ||||
Sbjct 1987 GAGTTTGAAAAGTTATATGAAAAATATGAACAAGAAGGTCGCGCAAGTAGAAAAATTAAA 1928
Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170
||||| || |||||| | || || || | || | || || || || || ||||||
Sbjct 1927 GCACAATCTCTTTGGTTTTCTATAATTGAAGCTCAAGTAGAAACTGGCACTCCATATATG 1868
Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230
|||| |||||||| || || | || |||||| || | |||| || ||| |
Sbjct 1867 TTGTTTAAAGATTCATGTAATAGAAAAAGCAACCAACAAAATGTTGGCACCATTAAATGC 1808
Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAAC 364290
|| || |||| || || ||| | ||||| | || || || || | ||| ||||| ||
Sbjct 1807 AGTAATTTATGCACAGAAATTGTAGAATATTCTGCACCAGATGAAATTGCGGTATGCAAT 1748
Query 364291 CTTGCGTCGATCGC 364304
| || ||||| ||
Sbjct 1747 TTGGCATCGATTGC 1734
>seq6120
Length=7451
Score = 140 bits (154), Expect = 8e-28
Identities = 406/608 (67%), Gaps = 18/608 (3%)
Strand=Plus/Plus
Query 111316 TTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGGT 111375
||||| | | ||||||||||| | |||| | | | ||||| ||||| ||||||
Sbjct 4440 TTCCATTATTGACAACAAAGCGCGTCTTTTGGCGTGCAGTCGTCGAGGAACTGTTGTGGT 4499
Query 111376 TTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCA-AAAAATGTAAAAATTTGGGAT 111434
|| | | || | ||| | || || | |||||| | |||||| || | |||||||||
Sbjct 4500 TTGTGGGTGGCAAAACAGACGCTAA-GCTGTTGCAGGAGAAAAATATACACATTTGGGAT 4558
Query 111435 GGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGA-CAACGAAGAAGGTGA 111493
|| || | ||||||| ||| | ||| | ||| | || | || || | ||
Sbjct 4559 GGCAACAGCACACGTGAATTTTTGGATAAATGCGGTTTCCATGATCGTCGC-GAGGCCGA 4617
Query 111494 TCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGC- 111552
||| || || || || || ||||||||||| |||||||| || | || || ||| |||
Sbjct 4618 TCTTGGTCCGGTATATGGTTTTCAATGGCGTCACTTTGGCGCCAAATATAAGACC-TGCG 4676
Query 111553 ACGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCAAATTAAGA 111612
|||| ||| ||| || ||| ||||| || | || ||||| | || |
Sbjct 4677 ACGATGATTATACCGGACAAGGTGTTGACCAATTGAAGCAAGTGATTGA-AACCATACGC 4735
Query 111613 AC-AACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCAT-TGGAAAA 111670
|| || ||||| |||||| ||||||||| || |||||||| || || | |
Sbjct 4736 ACAAATCCAACGGATCGTCGGATTATTATGTCCGCTTGGAACCC-TTTGGATATACCGCA 4794
Query 111671 AATGGCACTTCCACCATGTCATCTTATGTGC-CAGTTTTATGTA--CACGA----CGGGA 111723
|||||| | |||||||| ||| | | ||| || || || ||| |||| |||
Sbjct 4795 GATGGCATTGCCACCATGCCATTGTCT-TGCTCAATTCTACGTATCAACGACACGCGGTG 4853
Query 111724 TGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATA 111783
| | || ||||| ||||||| || || ||||| ||||| ||||| || ||||| |
Sbjct 4854 AGTTGTCTTGCCAGCTGTATCAACGCAGCGCAGATATGGGTCTGGGTGTGCCCTTTAACA 4913
Query 111784 TTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTG 111843
| || || ||||| ||||| | | | || |||||| | || || |||||||| |
Sbjct 4914 TCGCCTCGTATGCACTGCTTACGTACATGATAGCTCATGTGACGGGCCTTAAACCGGGAG 4973
Query 111844 AATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTTAAAA 111903
| ||| ||||| | || ||||| ||||| |||| |||||||| || || | ||
Sbjct 4974 ACTTCGTTCACACGCTTGGCGATGCTCATGTCTACAGTAACCACATAGAACCATTGAAGG 5033
Query 111904 CACAGTTG 111911
|||||||
Sbjct 5034 AACAGTTG 5041
>seq4404
Length=3800
Score = 100 bits (110), Expect = 7e-16
Identities = 298/447 (67%), Gaps = 17/447 (4%)
Strand=Plus/Plus
Query 22496 TTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCA-TTTTGTG-CAATCTT 22553
||||||| ||||||| ||| || ||||| |||||| ||| || ||||| | | |||||
Sbjct 2590 TTATTGCCTTTGCTGCGGTCGAGGGCATATTCTTTAGTGG--CAGTTTTGCGTCCATCTT 2647
Query 22554 TTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCG 22613
|||||| || ||||||| ||||||| ||| |||| || || ||||| |||||| ||
Sbjct 2648 TTGGCTGAAGAAACGTGGCCTTATGCCTGGTTTAACATTCTCCAATGAATTAATTTCGCG 2707
Query 22614 AGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAA 22673
||||| ||| | || || ||||| ||| | ||| | ||||| | | | |
Sbjct 2708 TGATGAAGGTTTACACTGTGACTTTGC-TGT-TCTTATGT-TCCATCATTTGGTGC---A 2761
Query 22674 ACTTCCA---TATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCT 22730
| |||| | || | | |||| || ||| | | ||||| || | || |
Sbjct 2762 GCGTCCAACCAAAGAGCGTATTATTGAAATCATTTCGGAGGCAGTCAAAATAGAGCAGGA 2821
Query 22731 ATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTAC 22790
||| | ||| || || || || | || ||||| || ||| || |||
Sbjct 2822 ATTCTTGACCGATGCATTGCCGGTTAACCTGATTGGCATGAATTGTAAACTGATGTCGGA 2881
Query 22791 ATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGG-TTATGCAAAGCAT-TAT 22848
||||||| | ||||| || ||||| ||| || || |||||| | ||||| || ||
Sbjct 2882 ATATATTGAGTTTGTCGCTGATCGCCTACTAGTTGAACTCGGCGTGGGCAAA--ATCTAC 2939
Query 22849 AACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTC 22908
||| |||||||| || |||||| | ||||| || || || ||||| || ||
Sbjct 2940 AACACAAAGAATCCATTCACATTCATGGAATTGATTTCGCTGGACGGCAAGACGAACTTT 2999
Query 22909 TTCGAAAAAAGAGTTGGTGAATACCAA 22935
||||| |||| ||| || ||||| |||
Sbjct 3000 TTCGAGAAAAAAGTAGGCGAATATCAA 3026
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303028416127886
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |