Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq489 102 7e-17 seq1169 100 2e-16 seq17788 86.0 5e-12 >seq489 Length=77466 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | || || ||||| | || || || | |||||| | || || ||| | Sbjct 4623 AAAATGCAGATATTCGTCAAAACTCTCACCGGTAAGACCATTACCTTGGAGGTTGAGCCT 4564 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | ||||| ||||| |||||||| ||||| || || || Sbjct 4563 TCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAAGAGGGCATTCCCCCAGAC 4504 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAACGTCAGCGATTA 24166 |||||| | ||||| | | |||||||||||| |||||| ||| | || | ||| || Sbjct 4503 CAACAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGACGCACAC-TTTCCGACTA 4445 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||||||||| || || || | ||||| || Sbjct 4444 CAACATTCAAAAGGAGTCGACCCTGCATTTGGT 4412 >seq1169 Length=8375 Score = 100 bits (110), Expect = 2e-16 Identities = 449/695 (65%), Gaps = 26/695 (4%) Strand=Plus/Plus Query 132590 GCATCGGCAAGTCCCTGAATGCCGATACCGATGGGTCTATGTTTAAAATTCGATACTTGT 132649 ||||| |||| ||||||| ||| || || || || | |||| | || || || | | Sbjct 1551 GCATCAGCAAAGCCCTGAACGCCAATGCCAATAGGACGATGTCTCAAGTTAGACTTTCGA 1610 Query 132650 GCG-CTAGTCAGCGGATAAAAGTTTTTGTCTATTATTTTATTGAGATTGTTAGTGACAAC 132708 || || | || |||||| | || |||| ||||||||||| ||||| || || | Sbjct 1611 GCCTCTTG-CAAAGGATAATAATTGATGTCAATTATTTTATTTAGATTTCGTGTTACTAT 1669 Query 132709 TCTAGCCACTTTATATAGCGATTCAAAGTCAAAGTTTTTAGTCCTTTTGTTGGCA-AAAC 132767 | | | |||| | || | ||| || ||| | ||||| ||| | | || |||| Sbjct 1670 TTTCGTTACTTCCTTTAACTTTTCGAAATCATATTTTTTT-TCC----GAGGACACAAAC 1724 Query 132768 A-ATTGACGGCAATCGAGGCCAAATTGCATACGGCTGTCTCTTTATTATCGCTATACTGT 132826 | ||| | ||||||||| |||||||||||||| || | || | | ||| | | Sbjct 1725 ATATTTAAGGCAATCGATGCCAAATTGCATACCGCAATTTCATCTGGTGCAGAATATTCT 1784 Query 132827 ACGATTTCTGCACACAAATTACTGTTTCGAATAACTCCCAAGtttttttGATTGTTTTTC 132886 || ||||||| || ||||||||| | ||| || | |||| ||| ||| |||| Sbjct 1785 ACAATTTCTGTGCATAAATTACTGCATTTAATGGTGCCAACATTTTGTTGGTTGCTTTT- 1843 Query 132887 TCGTTTACGT-TATCTTTATGCAACATGTACGGACCTCCGGTTTCGACCTGAATTTCGAT 132945 || |||| | ||||||| |||||| || ||| || ||||| || ||| ||| || Sbjct 1844 TCTATTACATGAATCTTTAAACAACATATATGGAGTGCCAGTTTCTACTTGAGCTTCAAT 1903 Query 132946 AATTTTTCTGTGAAGATCTAACGCCAAAATTTGTTCTTTAAACTTGC----CCTGAGT-C 133000 || |||| | || ||||| |||| |||||| ||| | Sbjct 1904 TATAGAAAACCAAAGAGATTGTGCTTTAATTT-TTCT----ACTTGCGCGACCTTCTTGT 1958 Query 133001 TCGTAACTTTCGTATAATCGCTCAAATTCTTCGCCATAGCAGTCGTTCAAACCGGGACAC 133060 || || |||| ||||| ||||| || || || | || | | || || || Sbjct 1959 TCATATTTTTCATATAACTTTTCAAACTCGTCACCCCAAACATCATGAAGGCCAGGGCAT 2018 Query 133061 TCGTCAGGACACATCAATGACCA-TTTTTCTCCTGCGCTCACCCTTTTCATGAACAACGA 133119 | | ||||||||| | |||||| | | || | | || || | |||||| || | Sbjct 2019 TTATGAGGACACATAAGTGACCACTCTCGATCTTCCTCT-ACTCGTTTCATAAAAAGGTC 2077 Query 133120 AGGTGTCCACATGGCAAAAAATAAATCGCGAGCCTTCATATCTTCCGCGCCCATATTTCG 133179 || |||| | || |||||||||| ||||| | |||||| || ||||| Sbjct 2078 TGGAATCCAAAGAGCGTAAAATAAATCACGAGCTCTGTGTTCTTCCTTTCCAGTATTTTT 2137 Query 133180 TTTCAAGTCCaaaaaagtaaaaaTGTCTGCATGCCAAGGCTCGATATATACGGCCAAAGC 133239 ||| | ||||| || ||||||||||||||||||||||| | ||| | || || || Sbjct 2138 TTTTAGATCCAAGAACTCGAAAATGTCTGCATGCCAAGGCTCTAAATAAATAGCAAATGC 2197 Query 133240 GCCTTTCCTTTT---ACCTCCCTGATCCACATGTC 133271 || ||| || |||||| ||||| |||| || Sbjct 2198 TCCAGGCCTCTTACCACCTCCTTGATCTACATATC 2232 >seq17788 Length=7208 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 23986 ACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGG 24045 |||| ||||| | ||||| ||||| | || || || | || || | || ||||| Sbjct 2193 ACAACATGCAGATTTTTGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAAC 2252 Query 24046 CCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCG 24105 | ||||| ||||| | |||||| |||||| ||||||||||| || ||||| | Sbjct 2253 CTTCGGACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAG 2312 Query 24106 ATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATT 24165 ||||||| | || || | | ||||| || | ||||||| ||| || |||| Sbjct 2313 ATCAACAACGTCTAATCTTTGCTGGCAAACAGTTGGAAGATGGTCGAACACTCTCTGATT 2372 Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||| || || |||||||| || | ||||| || || Sbjct 2373 ATAATATCCAGAAAGAATCGACTTTGCATTTGGTTTT 2409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429833964498315