Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq489 143 3e-29 seq17788 82.4 7e-11 >seq489 Length=77466 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || ||||| | |||||||||||||||||||||||| ||| Sbjct 4394 CCACCACGCAGACGGAGTACCAAATGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGGAA 4453 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || || |||||||| || |||| | |||||| ||||| || || Sbjct 4454 AGTGTGCGTCCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGTTGGTCTGGGGGA 4513 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || |||||||| ||| || ||||| | ||| | || || | | ||| | Sbjct 4514 ATGCCCTCTTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCAACC 4573 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||| |||||||| |||||||| ||||| |||||||| Sbjct 4574 TCCAAGGTAATGGTCTTACCGGTGAGAGTTTTGACGAATATCTGCAT 4620 >seq17788 Length=7208 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||| || ||||| | ||||| || || || || || ||||| Sbjct 2424 CCACCACGAAGGCGCAAAACCAAATGCAAAGTCGATTCTTTCTGGATATTATAATCAGAG 2365 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | ||| ||||| || |||||| ||| || || || ||||| Sbjct 2364 AGTGTTCGACCATCTTCCAACTGTTTGCCAGCAAAGATTAGACGTTGTTGATCTGGAGGA 2305 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||||||||| ||| | | || |||| | || | ||| || | | |||| Sbjct 2304 ATTCCTTCTTTGTC-CTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGAAGGTTCGAC 2246 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| ||||| || || ||||| || |||||||||||| Sbjct 2245 CTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTAACAAAAATCTGCATG 2197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471897906184320