Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq489 116 3e-21 >seq489 Length=77466 Score = 116 bits (128), Expect = 3e-21 Identities = 160/221 (72%), Gaps = 12/221 (5%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||||| |||||| || ||||||||||| ||||||||||||| | || |||||| Sbjct 4409 AGTACCAAATGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGGAAAGTGT----GCGTCC 4464 Query 16784 ----TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTT 16839 |||| ||| ||||| ||| | || || ||||||||||| || | ||||||||| Sbjct 4465 ATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGTTGGTCTGGGGGAATGCCCTCTTT 4524 Query 16840 GTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTG 16897 ||| || || || ||| || | | | ||||| ||||| |||| ||| Sbjct 4525 GTCCTGGATCTTAGC--CTTGACATTCTCGATGGTGTCAGAAGGCTCAACCTCCAAGGTA 4582 Query 16898 ATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 ||||| || ||||| || |||||||| || ||||||||||| Sbjct 4583 ATGGTCTTACCGGTGAGAGTTTTGACGAATATCTGCATTTT 4623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404991861604270