Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq6072 154 1e-32
seq489 122 6e-23
seq17788 109 4e-19
seq5699 100 2e-16
>seq6072
Length=35372
Score = 154 bits (170), Expect = 1e-32
Identities = 166/216 (77%), Gaps = 8/216 (4%)
Strand=Plus/Minus
Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221
||||| ||| | ||||||||||| | ||| | ||| |||||| ||||| |||||||||
Sbjct 17726 ATGGGTACCGTTAACGTAAATCGCAGTGTCACTGACATGTTCTATCGCTATAAAATGCCG 17667
Query 6222 CGCATCTGC--GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACA 6279
|| ||||| ||||||||||| || || || ||||| ||||||||||| |||| ||||
Sbjct 17666 CG--TCTGCAAGCCAAGGTCGAAGGCAAAGGTAACGGCATTAAAACCGTGCTTGTTAACA 17609
Query 6280 TGCCTGAAGTCGCTAAGGCGC--TCGGACGCCCTGCCACCTACCCGACGAAATATTTCGG 6337
|| | ||||| || | |||| |||| || || || || || ||||| || ||||| ||
Sbjct 17608 TGGCCGAAGTGGC--ACGCGCCATCGGCCGTCCGGCAACATATCCGACCAAGTATTTTGG 17551
Query 6338 GTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373
|| || | |||||||| ||||| || ||||| ||
Sbjct 17550 CTGTGAGTTGGGCGCTCAAACGCAATTCGATCATAA 17515
>seq489
Length=77466
Score = 122 bits (134), Expect = 6e-23
Identities = 166/232 (72%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | || ||| | |||||||| || || |||||||||||| ||||| || |
Sbjct 4392 TACCACCACGCAGACGGAGTACCAAATGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGG 4451
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| | ||| | || || | ||| || |||||||| || || || ||||| || | ||
Sbjct 4452 AAAGTGTGCGTCCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGTTGGTCTGGGG 4511
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
| | ||| ||||||||| || || ||| ||||||| || || || | ||||
Sbjct 4512 GAATGCCCTCTTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCAA 4571
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
| || || ||||| || ||||| || | ||||| |||||||||||||| ||
Sbjct 4572 CCTCCAAGGTAATGGTCTTACCGGTGAGAGTTTTGACGAATATCTGCATTTT 4623
>seq17788
Length=7208
Score = 109 bits (120), Expect = 4e-19
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162
||||| |||||||| | ||| || || || ||||| |||||||| | || |
Sbjct 2412 CGCAAAACCAAATGCAAAGTCGATTCTTTCTGGATATTATAATCAGAGAGTGTTCGACCA 2353
Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222
|| || || ||||| || ||||| ||||| ||||||||||| | || | |||||||||
Sbjct 2352 TCTTCCAACTGTTTGCCAGCAAAGATTAGACGTTGTTGATCTGGAGGAATTCCTTCTTTG 2293
Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282
||| ||| || || ||||| | || ||| || | ||| || || | || ||
Sbjct 2292 TCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGAAGGTTCGACCTCAAGAGTGATG 2233
Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| |||||||| | |||||| || || |||||||||||
Sbjct 2232 GTCTTACCCGTGAGGGTTTTAACAAAAATCTGCATGTT 2195
>seq5699
Length=1300
Score = 100 bits (110), Expect = 2e-16
Identities = 60/63 (95%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 770 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCGT 711
Query 20007 GGT 20009
|||
Sbjct 710 GGT 708
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334867707923063
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |