Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq6072 154 1e-32 seq489 122 6e-23 seq17788 109 4e-19 seq5699 100 2e-16 >seq6072 Length=35372 Score = 154 bits (170), Expect = 1e-32 Identities = 166/216 (77%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 ||||| ||| | ||||||||||| | ||| | ||| |||||| ||||| ||||||||| Sbjct 17726 ATGGGTACCGTTAACGTAAATCGCAGTGTCACTGACATGTTCTATCGCTATAAAATGCCG 17667 Query 6222 CGCATCTGC--GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACA 6279 || ||||| ||||||||||| || || || ||||| ||||||||||| |||| |||| Sbjct 17666 CG--TCTGCAAGCCAAGGTCGAAGGCAAAGGTAACGGCATTAAAACCGTGCTTGTTAACA 17609 Query 6280 TGCCTGAAGTCGCTAAGGCGC--TCGGACGCCCTGCCACCTACCCGACGAAATATTTCGG 6337 || | ||||| || | |||| |||| || || || || || ||||| || ||||| || Sbjct 17608 TGGCCGAAGTGGC--ACGCGCCATCGGCCGTCCGGCAACATATCCGACCAAGTATTTTGG 17551 Query 6338 GTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 || || | |||||||| ||||| || ||||| || Sbjct 17550 CTGTGAGTTGGGCGCTCAAACGCAATTCGATCATAA 17515 >seq489 Length=77466 Score = 122 bits (134), Expect = 6e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | |||||||| || || |||||||||||| ||||| || | Sbjct 4392 TACCACCACGCAGACGGAGTACCAAATGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGG 4451 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| | || || | ||| || |||||||| || || || ||||| || | || Sbjct 4452 AAAGTGTGCGTCCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGTTGGTCTGGGG 4511 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||| ||||||||| || || ||| ||||||| || || || | |||| Sbjct 4512 GAATGCCCTCTTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCAA 4571 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || || ||||| || ||||| || | ||||| |||||||||||||| || Sbjct 4572 CCTCCAAGGTAATGGTCTTACCGGTGAGAGTTTTGACGAATATCTGCATTTT 4623 >seq17788 Length=7208 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 ||||| |||||||| | ||| || || || ||||| |||||||| | || | Sbjct 2412 CGCAAAACCAAATGCAAAGTCGATTCTTTCTGGATATTATAATCAGAGAGTGTTCGACCA 2353 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || || || ||||| || ||||| ||||| ||||||||||| | || | ||||||||| Sbjct 2352 TCTTCCAACTGTTTGCCAGCAAAGATTAGACGTTGTTGATCTGGAGGAATTCCTTCTTTG 2293 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 ||| ||| || || ||||| | || ||| || | ||| || || | || || Sbjct 2292 TCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGAAGGTTCGACCTCAAGAGTGATG 2233 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || |||||||| | |||||| || || ||||||||||| Sbjct 2232 GTCTTACCCGTGAGGGTTTTAACAAAAATCTGCATGTT 2195 >seq5699 Length=1300 Score = 100 bits (110), Expect = 2e-16 Identities = 60/63 (95%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| Sbjct 770 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCGT 711 Query 20007 GGT 20009 ||| Sbjct 710 GGT 708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334867707923063