Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq489 132 4e-26
seq17788 113 4e-20
>seq489
Length=77466
Score = 132 bits (146), Expect = 4e-26
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| ||||| || || ||| | |||||||| |||| || | || || ||| | ||
Sbjct 4621 AATGCAGATATTCGTCAAAACTCTCACCGGTAAGACCATTACCTTGGAGGTTGAGCCTTC 4562
Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|||||| |||||| | ||| || ||| |||||||| || ||||| || |||||
Sbjct 4561 TGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAAGAGGGCATTCCCCCAGACCA 4502
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|||||| | || ||||||||||| ||| | ||||||| ||||| | ||| |||||
Sbjct 4501 ACAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGACGCACACTTTCCGACTACAA 4442
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||||||| || || || || ||||| || ||
Sbjct 4441 CATTCAAAAGGAGTCGACCCTGCATTTGGTACT 4409
>seq17788
Length=7208
Score = 113 bits (124), Expect = 4e-20
Identities = 154/213 (72%), Gaps = 8/213 (4%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| || || | || ||||| ||||||| | || || || | ||
Sbjct 2198 ATGCAGATTTTTGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCTTCG 2257
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
||||||||||| |||| |||| || | ||| ||||||||||| ||||| || ||
Sbjct 2258 GACACTATCGAAAATGTCA---AAGCCAAGATTCAG-GACAAAGAAGGAATTCCTCCAGA 2313
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||||| || | || ||||| |||||||| || ||||||| ||| || | |||||
Sbjct 2314 TCAACAACGTCTAATCTTTGCTGGCAAACAGTTGGAAGATGGTCGAACACTCTCTGATTA 2373
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT 25207
||||| || |||||||| || | ||||| ||
Sbjct 2374 TAATATCCAGAAAGAATCGACTTTGCATTTGGT 2406
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433225159484495
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |