Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq4404 178 1e-39 seq385 122 1e-22 seq11177 120 3e-22 seq13145 87.8 2e-12 >seq4404 Length=3800 Score = 178 bits (196), Expect = 1e-39 Identities = 205/276 (74%), Gaps = 0/276 (0%) Strand=Plus/Minus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 ||||||| ||| || || |||||||| | ||||||||| || || ||||| ||||| Sbjct 2408 GAATCTCTTATATAGGTGTCGATTAAAACGCTATACATTTCGGAGTGCACATTTTCCATG 2349 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTC 93472 ||||||||||| || ||||| || | || || || | || |||||||| || | | Sbjct 2348 GCAATTTGGAAGCCATAGAAGCAACGTGCCTCAGTCACTTGAACTTCTTGGCTGAAACGC 2289 Query 93473 TCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTT 93532 || || | ||||||||| || || |||||||| || ||||| |||||||| | ||| | Sbjct 2288 TCGACCAAATTTTCATTCACAATGCCATCGGAAGCAGCAAAGAAAGCCAACACGTGCGAT 2229 Query 93533 ATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCG 93592 || ||||| ||| | ||| |||||||| ||||||| | | || || || ||||| Sbjct 2228 ATGAAATGACGCTCGTTATCAGTAAGCTTAGCCCAATCTGTCAAGTCCTTCGACAGATCT 2169 Query 93593 ACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTT 93628 ||||| || || ||||| || ||||| ||||| ||| Sbjct 2168 ACTTCCTCAACTGTCCAGAATGATGCCTCTGCCTTT 2133 Score = 178 bits (196), Expect = 1e-39 Identities = 367/533 (69%), Gaps = 21/533 (4%) Strand=Plus/Minus Query 92742 TTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACA 92801 ||| || || ||||| | ||||| || ||||| || | || | ||| ||||| || Sbjct 3086 TTAAAAGTCAGCATCCAAAGTAAAAACGTTGTCTAGACGGTT---AGACATTACACC-CA 3031 Query 92802 TTT-TTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCG 92860 | ||| ||||| || |||||||| || || || || ||||| || |||| || ||| Sbjct 3030 TGCGTTGATATTCGCCTACTTTTTTCTCGAAAAAGTTCGTCTTGCCGTCCAGCGAAATCA 2971 Query 92861 AATTCACTA--GTGATTGGATTCTTGGCGTTATA-ATACTTTTCAC--CGA--TCAACTC 92913 | | || | |||| ||||||||| | ||| || || | ||| ||| |||||| Sbjct 2970 ATTCCATGAATGTGAATGGATTCTTTGTGTTGTAGATTTTGCCCACGCCGAGTTCAACTA 2911 Query 92914 GTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCC 92973 ||| | |||||| ||||| || || || | ||||||| | ||||||||| || Sbjct 2910 GTAGG-----CGATCAGCGACAAACTCAATATATTCCGACATCAGTTTACAATTCATGCC 2856 Query 92974 TAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTT 93033 | || || || | || ||||||||||| || | ||| ||| || || || Sbjct 2855 AATCAGGTTAACCGGCAATGCATCGGTCAAGAATTCCTGCTCTATTTTGACTGCCTCCGA 2796 Query 93034 CAAGATTTCTATTACTCTACTATTTGGT-GGTTTTTGTACGACATAATTGTACATTAAGC 93092 | |||||| || | | || |||||| || || || | || || | |||| ||| Sbjct 2795 AATGATTTCAATAATACG-CTCTTTGGTTGGACGCTGCACCAAATGATGGAACAT-AAGA 2738 Query 93093 AC-GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || |||||||| ||||||||||| || || || || || |||||| |||||||||| Sbjct 2737 ACAGCAAAGTCACAGTGTAAACCTTCATCACGCGAAATTAATTCATTGGAGAATGTTAAA 2678 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 || || | || || |||||||| |||||||| || || |||||||| ||| ||| ||| Sbjct 2677 CCAGGCATAAGGCCACGTTTCTTCAGCCAAAAGATGGACGCAAAACTGCCACTAAAGAAT 2618 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATT 93264 || || || || || ||||| || | ||| | || | ||||| || || || Sbjct 2617 ATGCCCTCGACCGCAGCAAAGGCAATAATTCTCTCACCGAAATTAGCTGATTT 2565 >seq385 Length=4850 Score = 122 bits (134), Expect = 1e-22 Identities = 83/91 (91%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGT-GGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC--GGG 126319 ||||||||||||||||||| |||||||||||||||||||||| |||||||| | ||| Sbjct 196 ACAGTCAGGTTGGCCGAGTCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGGG 137 Query 126320 AGCGTGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||||||||| |||||||||||||||| Sbjct 136 AGCGTGGGTTCGAATCCCACACCTGACAAAT 106 >seq11177 Length=30182 Score = 120 bits (132), Expect = 3e-22 Identities = 78/85 (92%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 2735 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAAAGGGAGC 2794 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| |||||||||||||| Sbjct 2795 GTGGGTTCGATCCCCACACCTGACA 2819 >seq13145 Length=4756 Score = 87.8 bits (96), Expect = 2e-12 Identities = 59/65 (91%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 126286 TAAGGCGCCAGATTTAAGATCTGGTTCCCTCG--GGAGCGTGGGTTCGAACCCCACACCT 126343 |||||||||||||||||| |||||||| | | |||||||||||||||||||||||||| Sbjct 4756 TAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGGGAGCGTGGGTTCGAACCCCACACCT 4697 Query 126344 GACAA 126348 ||||| Sbjct 4696 GACAA 4692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556725253120520