Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq1169 183 3e-41
seq17788 154 1e-32
seq489 116 3e-21
seq4404 87.8 2e-12
>seq1169
Length=8375
Score = 183 bits (202), Expect = 3e-41
Identities = 992/1568 (63%), Gaps = 36/1568 (2%)
Strand=Plus/Plus
Query 128779 TTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCT 128838
||||| || ||||||| ||||| | ||||||||||| ||||| ||||| ||||| ||
Sbjct 822 TTGTCTACAGTAAATTGTATAGCATTTGCTGCCGGCTTTGTGCGTAAATAATACATTCCA 881
Query 128839 GTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGT 128898
||||| | ||| |||||| | | | ||| || | ||||| | || | |||
Sbjct 882 GTTTTAAGACCTGCTTTCCATGAATAAAAGTGTATTGAAGTCAATTTACCATAATTTGGT 941
Query 128899 TGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCC 128958
| | | ||||| ||||| || ||||| ||||| || | || | ||| ||||||
Sbjct 942 TCGGCGACATGTATATTGAATGACTGGCTTTGGTCAATGAAAGCTCCTCTATCTGCAGCC 1001
Query 128959 ATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGT 129018
|| || ||| || || ||||| || ||||| || | ||||| || | |
Sbjct 1002 ATTTTTATTGTTGATTTTACAGAAATCTCCCAGACAGTTTTATATAAGTCTCTGACATCT 1061
Query 129019 TTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATC 129078
|| || ||| |||||| | || | || ||| | || || ||| |||
Sbjct 1062 TTAGGAATTGTTTCAATATGTTGAATAGAACCACGACTTGACACTATATTATTTTTCATA 1121
Query 129079 TGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACTTGA 129138
| || | |||||| || || | ||||| || || | ||| | ||||||
Sbjct 1122 TCATCATCCCACAAATCCAATTCAGTTAAATCACGTAATAAATAATGGTTAACAACTTGA 1181
Query 129139 AAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTCA 129198
|| || || | ||||| | | ||| || || ||| | || ||||| ||||||
Sbjct 1182 AACTCTCCAGATAAAACCCTTCTGGTGTATATATTTGAAGTGTAGGGTTCAAATGATTCA 1241
Query 129199 TTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGCGAGTTT 129258
|| || || | |||||||| || | || || ||||| || || || || |||
Sbjct 1242 TTATTTCCCATGATTTGAGCTGTAGAAGCTGTAGGCATTGGTGCTACAAGGAGGGAATTT 1301
Query 129259 CGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGATGTGGGT 129318
| | || | || || ||| | ||||||||| ||| ||||||| || |||
Sbjct 1302 CTTACTCCATACTTTTGAATCTTAAGCTTTAATTGTTGCCAATCCCACAAATTCGTTGGT 1361
Query 129319 GTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAAAGTAGGAA 129378
| | ||||| ||| ||||| | || || || || || || |
Sbjct 1362 TTTTTTCCCCACATGTCATATTGTAGGATTCCTTTGCTTATAGGGCTTCCCTCATACGTC 1421
Query 129379 TCGTGCACGCCGTAAGCTTTT--GCCAATTCGCAACTCGCTTCCAATGCGCCAAAATAAA 129436
|| | || || ||||| |||| ||| ||||| ||||| || | | |||| |
Sbjct 1422 TCATAGGGACCATA--CTTTTCAGCCAGTTCACAACTTGCTTCTAAGGAACTGTAATATA 1479
Query 129437 TTGTTTCGGCAATTTTGGTG-TTCAACACTTTGGCCTGGTCGCTTTCGTACGGCATACGC 129495
| ||||| ||||| | || || || | ||| | |||||||| || || ||||
Sbjct 1480 TCGTTTCAAAAATTT-GTTGATTTAAAAGAAAGGCTTCTTCGCTTTCATAGGGATAACGC 1538
Query 129496 AACATGGCAAATGTG----TCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTT 129551
| | |||| | || || || || |||| || | || || || |||||| |
Sbjct 1539 ATTA----AAATTAGAGCATCAGCAAAGCCCTGAACGCCAATGCCAATAGGACGATGTCT 1594
Query 129552 TCTATTGGATTTTTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTTAA 129611
|| || ||| | ||| ||| ||||| || |||||||| || ||||| ||||
Sbjct 1595 CAAGTTAGACTTTCGAGCCTCTTGCAAAGGATAATAATTGATGTCAATTATTTTATTTAG 1654
Query 129612 ATT-CTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTACAT 129670
||| | || || ||||||||||| | |||||| |||| |||| || | | |
Sbjct 1655 ATTTCGTGTT-ACTATTTTCGTTACTTCCTTTAACTTTTCGAAATCATATTTTTTTTC-- 1711
Query 129671 CGATGTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTT 129730
||| | | ||||| ||| | |||||| ||||||||||| || ||| |||| | |
Sbjct 1712 CGAGGAC-ACAAACATATTTAAGGCAATCGATGCCAAATTGCATACCGCAATTTCATCTG 1770
Query 129731 TGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCT 129790
|| || || |||||||| | ||| |||||||| |||||||||||| | || |
Sbjct 1771 GTGCAGAATATTCTACAATTTCTGTGCATAAATTACTGCATTTAATGGTGCCAACATTTT 1830
Query 129791 TTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGA 129850
||| || ||||| | || || | |||||| ||| ||| || || ||||| ||||| |
Sbjct 1831 GTTGGTTGCTTTTTCTATTACATGAATCTTTAAACAACATATATGGAGTGCCAGTTTCTA 1890
Query 129851 CTTGCGTTTCGACAATGGTCCTGAAC--AAG-TCTCGAGCCTTGATCTGTCTTACAAATT 129907
|||| | || |||| | ||| ||| | | || || || | ||| | |
Sbjct 1891 CTTGAGCTT---CAATTATAGAAAACCAAAGAGATTGTGCTTTAATTTTTCT---ACTTG 1944
Query 129908 TGCCAC---ATTTCTCGTATGCCACATACAGTTGTTCAAATTCTGAGCCGTGTACGGTGT 129964
|| || || || ||| |||| | | |||||| || || || |
Sbjct 1945 CGCGACCTTCTTGTTCATATTTTTCATATAACTTTTCAAACTCGTCACCCCAAACATCAT 2004
Query 129965 CGA-GCAACGGCGATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCGACTCGT 130023
| || | ||| ||| | | |||||||| | |||| || ||| | || ||||||
Sbjct 2005 GAAGGCCAGGGC-ATTTATGAGGACACATAAGTGACCACTCTCGATCTTCCTCTACTCGT 2063
Query 130024 TTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTTCTATCCTCG 130083
|||||||| | || || | ||| || ||||| || ||||| || ||| | || ||
Sbjct 2064 TTCATAAAAAGGTCTGGAATCCAAAGAGCGTAAAATAAATCACGAGCTCTGTGTTCTTCC 2123
Query 130084 GCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACA 130143
|| | || ||| || || | ||| ||| ||||||| || ||||| || || | |
Sbjct 2124 TTTCCAGTATTTTTTTTTAGATCCAAGAACTCGAAAATGTCTGCATGCCAAGGCTCTAAA 2183
Query 130144 TAAATTGCCATTGCGCCCTTCCGTTT---GCCCCCTTGGTCAACGTGGCGCACGGCATTG 130200
||||| || | ||| || || || || ||||| || || | || || ||||
Sbjct 2184 TAAATAGCAAATGCTCCAGGCCTCTTACCACCTCCTTGATCTACATATCGTGCGACATTA 2243
Query 130201 TTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAA 130260
|| | |||| | ||||| | | | ||| || | || || || || | | ||| ||
Sbjct 2244 TTAAAAACTCTAAGCATTGGCACAAGTCCATTCGATGTACCATTAGTTCCCGAAATTGAA 2303
Query 130261 CTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATC 130320
| || ||| |||| | |||||| ||| |||||| || ||| || |||||||||||
Sbjct 2304 GTACCCTTAGCACGAATGCAATGAACATTTATACCTATTCCACCGGCAGATTTTGATATC 2363
Query 130321 AACGCGCA 130328
| ||| ||
Sbjct 2364 ATCGCACA 2371
>seq17788
Length=7208
Score = 154 bits (170), Expect = 1e-32
Identities = 165/218 (76%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|| ||||| |||||||||||||| | || ||||| || |||||||||| || ||| |
Sbjct 2195 AACATGCAGATTTTTGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCT 2254
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| || || | || || ||||| || ||||| ||||| || || ||||| || |||
Sbjct 2255 TCGGACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 2314
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
||||||||||| || ||||| ||||||||||| || ||| || || |||| |||||
Sbjct 2315 CAACAACGTCTAATCTTTGCTGGCAAACAGTTGGAAGATGGTCGAACACTCTCTGATTAT 2374
Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433
|| || || |||||||| || | ||||| ||||||||
Sbjct 2375 AATATCCAGAAAGAATCGACTTTGCATTTGGTTTTGCG 2412
>seq489
Length=77466
Score = 116 bits (128), Expect = 3e-21
Identities = 166/234 (71%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|| ||||| || || || |||||| | |||||||| || | || | || || || |
Sbjct 4623 AAAATGCAGATATTCGTCAAAACTCTCACCGGTAAGACCATTACCTTGGAGGTTGAGCCT 4564
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| || ||| | || || |||| || || || ||||| ||||| ||||| || ||
Sbjct 4563 TCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAAGAGGGCATTCCCCCAGAC 4504
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
||||| ||||| || ||||||||||| || | || ||| ||||| | ||||| |||
Sbjct 4503 CAACAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGACGCACACTTTCCGACTAC 4444
Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449
||||||||||| || || ||| | ||||| || | || |||| || ||| ||
Sbjct 4443 AACATTCAAAAGGAGTCGACCCTGCATTTGGTACTCCGTCTGCGTGGTGGTATT 4390
>seq4404
Length=3800
Score = 87.8 bits (96), Expect = 2e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 117081 GTCGAAGGCATTTTCTTTTCAGGCAGTTTTGCTGCCATATTTTTTATCAAGACCAAAGGT 117140
||||| ||||| |||||| ||||||||||| |||| |||| | |||| ||
Sbjct 2607 GTCGAGGGCATATTCTTTAGTGGCAGTTTTGCGTCCATCTTTTGGCTGAAGAAACGTGGC 2666
Query 117141 CTAATGCCGGGTCTAACGTTTAGCAACGAATTAATATCGCGTGACGAAGGTTTACACACC 117200
|| ||||| ||| |||| || ||| |||||||| |||||||| ||||||||||||
Sbjct 2667 CTTATGCCTGGTTTAACATTCTCCAATGAATTAATTTCGCGTGATGAAGGTTTACACTGT 2726
Query 117201 GATTTTGC 117208
|| |||||
Sbjct 2727 GACTTTGC 2734
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419628387134245
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |