Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1169 183 3e-41 seq17788 154 1e-32 seq489 116 3e-21 seq4404 87.8 2e-12 >seq1169 Length=8375 Score = 183 bits (202), Expect = 3e-41 Identities = 992/1568 (63%), Gaps = 36/1568 (2%) Strand=Plus/Plus Query 128779 TTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCT 128838 ||||| || ||||||| ||||| | ||||||||||| ||||| ||||| ||||| || Sbjct 822 TTGTCTACAGTAAATTGTATAGCATTTGCTGCCGGCTTTGTGCGTAAATAATACATTCCA 881 Query 128839 GTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGT 128898 ||||| | ||| |||||| | | | ||| || | ||||| | || | ||| Sbjct 882 GTTTTAAGACCTGCTTTCCATGAATAAAAGTGTATTGAAGTCAATTTACCATAATTTGGT 941 Query 128899 TGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCC 128958 | | | ||||| ||||| || ||||| ||||| || | || | ||| |||||| Sbjct 942 TCGGCGACATGTATATTGAATGACTGGCTTTGGTCAATGAAAGCTCCTCTATCTGCAGCC 1001 Query 128959 ATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGT 129018 || || ||| || || ||||| || ||||| || | ||||| || | | Sbjct 1002 ATTTTTATTGTTGATTTTACAGAAATCTCCCAGACAGTTTTATATAAGTCTCTGACATCT 1061 Query 129019 TTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATC 129078 || || ||| |||||| | || | || ||| | || || ||| ||| Sbjct 1062 TTAGGAATTGTTTCAATATGTTGAATAGAACCACGACTTGACACTATATTATTTTTCATA 1121 Query 129079 TGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACTTGA 129138 | || | |||||| || || | ||||| || || | ||| | |||||| Sbjct 1122 TCATCATCCCACAAATCCAATTCAGTTAAATCACGTAATAAATAATGGTTAACAACTTGA 1181 Query 129139 AAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTCA 129198 || || || | ||||| | | ||| || || ||| | || ||||| |||||| Sbjct 1182 AACTCTCCAGATAAAACCCTTCTGGTGTATATATTTGAAGTGTAGGGTTCAAATGATTCA 1241 Query 129199 TTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGCGAGTTT 129258 || || || | |||||||| || | || || ||||| || || || || ||| Sbjct 1242 TTATTTCCCATGATTTGAGCTGTAGAAGCTGTAGGCATTGGTGCTACAAGGAGGGAATTT 1301 Query 129259 CGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGATGTGGGT 129318 | | || | || || ||| | ||||||||| ||| ||||||| || ||| Sbjct 1302 CTTACTCCATACTTTTGAATCTTAAGCTTTAATTGTTGCCAATCCCACAAATTCGTTGGT 1361 Query 129319 GTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAAAGTAGGAA 129378 | | ||||| ||| ||||| | || || || || || || | Sbjct 1362 TTTTTTCCCCACATGTCATATTGTAGGATTCCTTTGCTTATAGGGCTTCCCTCATACGTC 1421 Query 129379 TCGTGCACGCCGTAAGCTTTT--GCCAATTCGCAACTCGCTTCCAATGCGCCAAAATAAA 129436 || | || || ||||| |||| ||| ||||| ||||| || | | |||| | Sbjct 1422 TCATAGGGACCATA--CTTTTCAGCCAGTTCACAACTTGCTTCTAAGGAACTGTAATATA 1479 Query 129437 TTGTTTCGGCAATTTTGGTG-TTCAACACTTTGGCCTGGTCGCTTTCGTACGGCATACGC 129495 | ||||| ||||| | || || || | ||| | |||||||| || || |||| Sbjct 1480 TCGTTTCAAAAATTT-GTTGATTTAAAAGAAAGGCTTCTTCGCTTTCATAGGGATAACGC 1538 Query 129496 AACATGGCAAATGTG----TCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTT 129551 | | |||| | || || || || |||| || | || || || |||||| | Sbjct 1539 ATTA----AAATTAGAGCATCAGCAAAGCCCTGAACGCCAATGCCAATAGGACGATGTCT 1594 Query 129552 TCTATTGGATTTTTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTTAA 129611 || || ||| | ||| ||| ||||| || |||||||| || ||||| |||| Sbjct 1595 CAAGTTAGACTTTCGAGCCTCTTGCAAAGGATAATAATTGATGTCAATTATTTTATTTAG 1654 Query 129612 ATT-CTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTACAT 129670 ||| | || || ||||||||||| | |||||| |||| |||| || | | | Sbjct 1655 ATTTCGTGTT-ACTATTTTCGTTACTTCCTTTAACTTTTCGAAATCATATTTTTTTTC-- 1711 Query 129671 CGATGTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTT 129730 ||| | | ||||| ||| | |||||| ||||||||||| || ||| |||| | | Sbjct 1712 CGAGGAC-ACAAACATATTTAAGGCAATCGATGCCAAATTGCATACCGCAATTTCATCTG 1770 Query 129731 TGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCT 129790 || || || |||||||| | ||| |||||||| |||||||||||| | || | Sbjct 1771 GTGCAGAATATTCTACAATTTCTGTGCATAAATTACTGCATTTAATGGTGCCAACATTTT 1830 Query 129791 TTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGA 129850 ||| || ||||| | || || | |||||| ||| ||| || || ||||| ||||| | Sbjct 1831 GTTGGTTGCTTTTTCTATTACATGAATCTTTAAACAACATATATGGAGTGCCAGTTTCTA 1890 Query 129851 CTTGCGTTTCGACAATGGTCCTGAAC--AAG-TCTCGAGCCTTGATCTGTCTTACAAATT 129907 |||| | || |||| | ||| ||| | | || || || | ||| | | Sbjct 1891 CTTGAGCTT---CAATTATAGAAAACCAAAGAGATTGTGCTTTAATTTTTCT---ACTTG 1944 Query 129908 TGCCAC---ATTTCTCGTATGCCACATACAGTTGTTCAAATTCTGAGCCGTGTACGGTGT 129964 || || || || ||| |||| | | |||||| || || || | Sbjct 1945 CGCGACCTTCTTGTTCATATTTTTCATATAACTTTTCAAACTCGTCACCCCAAACATCAT 2004 Query 129965 CGA-GCAACGGCGATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCGACTCGT 130023 | || | ||| ||| | | |||||||| | |||| || ||| | || |||||| Sbjct 2005 GAAGGCCAGGGC-ATTTATGAGGACACATAAGTGACCACTCTCGATCTTCCTCTACTCGT 2063 Query 130024 TTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTTCTATCCTCG 130083 |||||||| | || || | ||| || ||||| || ||||| || ||| | || || Sbjct 2064 TTCATAAAAAGGTCTGGAATCCAAAGAGCGTAAAATAAATCACGAGCTCTGTGTTCTTCC 2123 Query 130084 GCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACA 130143 || | || ||| || || | ||| ||| ||||||| || ||||| || || | | Sbjct 2124 TTTCCAGTATTTTTTTTTAGATCCAAGAACTCGAAAATGTCTGCATGCCAAGGCTCTAAA 2183 Query 130144 TAAATTGCCATTGCGCCCTTCCGTTT---GCCCCCTTGGTCAACGTGGCGCACGGCATTG 130200 ||||| || | ||| || || || || ||||| || || | || || |||| Sbjct 2184 TAAATAGCAAATGCTCCAGGCCTCTTACCACCTCCTTGATCTACATATCGTGCGACATTA 2243 Query 130201 TTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAA 130260 || | |||| | ||||| | | | ||| || | || || || || | | ||| || Sbjct 2244 TTAAAAACTCTAAGCATTGGCACAAGTCCATTCGATGTACCATTAGTTCCCGAAATTGAA 2303 Query 130261 CTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATC 130320 | || ||| |||| | |||||| ||| |||||| || ||| || ||||||||||| Sbjct 2304 GTACCCTTAGCACGAATGCAATGAACATTTATACCTATTCCACCGGCAGATTTTGATATC 2363 Query 130321 AACGCGCA 130328 | ||| || Sbjct 2364 ATCGCACA 2371 >seq17788 Length=7208 Score = 154 bits (170), Expect = 1e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| |||||||||||||| | || ||||| || |||||||||| || ||| | Sbjct 2195 AACATGCAGATTTTTGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCT 2254 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || || ||||| || ||||| ||||| || || ||||| || ||| Sbjct 2255 TCGGACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 2314 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||||||||| || ||||| ||||||||||| || ||| || || |||| ||||| Sbjct 2315 CAACAACGTCTAATCTTTGCTGGCAAACAGTTGGAAGATGGTCGAACACTCTCTGATTAT 2374 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || || |||||||| || | ||||| |||||||| Sbjct 2375 AATATCCAGAAAGAATCGACTTTGCATTTGGTTTTGCG 2412 >seq489 Length=77466 Score = 116 bits (128), Expect = 3e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || || |||||| | |||||||| || | || | || || || | Sbjct 4623 AAAATGCAGATATTCGTCAAAACTCTCACCGGTAAGACCATTACCTTGGAGGTTGAGCCT 4564 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || || |||| || || || ||||| ||||| ||||| || || Sbjct 4563 TCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAAGAGGGCATTCCCCCAGAC 4504 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||| ||||| || ||||||||||| || | || ||| ||||| | ||||| ||| Sbjct 4503 CAACAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGACGCACACTTTCCGACTAC 4444 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 ||||||||||| || || ||| | ||||| || | || |||| || ||| || Sbjct 4443 AACATTCAAAAGGAGTCGACCCTGCATTTGGTACTCCGTCTGCGTGGTGGTATT 4390 >seq4404 Length=3800 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 117081 GTCGAAGGCATTTTCTTTTCAGGCAGTTTTGCTGCCATATTTTTTATCAAGACCAAAGGT 117140 ||||| ||||| |||||| ||||||||||| |||| |||| | |||| || Sbjct 2607 GTCGAGGGCATATTCTTTAGTGGCAGTTTTGCGTCCATCTTTTGGCTGAAGAAACGTGGC 2666 Query 117141 CTAATGCCGGGTCTAACGTTTAGCAACGAATTAATATCGCGTGACGAAGGTTTACACACC 117200 || ||||| ||| |||| || ||| |||||||| |||||||| |||||||||||| Sbjct 2667 CTTATGCCTGGTTTAACATTCTCCAATGAATTAATTTCGCGTGATGAAGGTTTACACTGT 2726 Query 117201 GATTTTGC 117208 || ||||| Sbjct 2727 GACTTTGC 2734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419628387134245