Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_009016.1 Length=38197 Score E Sequences producing significant alignments: (Bits) Value seq17700 82.4 2e-11 >seq17700 Length=9767 Score = 82.4 bits (90), Expect = 2e-11 Identities = 177/263 (67%), Gaps = 4/263 (2%) Strand=Plus/Plus Query 25223 AATTGGCAGCTCGTACCCTTCGAGGGCTT--GCATCACTTCGCCGCTGAGGCGGGTGTTT 25280 ||| |||||| |||| || | || || | ||| || ||||||| | ||||||| | Sbjct 8715 AATGGGCAGCGCGTAGCCGACCAGCGCGTCGGCA--ACCTCGCCGCCAATGCGGGTGCCT 8772 Query 25281 TTGATTGCTCGGCTGATGACGAACGCGCCGCGAGGGTGGCCGTCAGTCACTTCCTGGCGA 25340 ||||| || | | | ||||| || | | | | ||||| || ||||| ||| Sbjct 8773 TTGATCGCCCTGGACACCACGAAAGCCGCTTGCAGCTTCCCGTCCGTGACTTCGATGCGC 8832 Query 25341 GCCTTGAGCAGTTCCACAAGGTCAGAGCAGGCCCAGATGTCATAGGGGCTCGGCTGAACA 25400 ||||| ||| ||||||||||| | |||||| ||||||||||| ||||| || Sbjct 8833 TGCTTGACCAGCTCCACAAGGTCGGCCGTGGCCCAAATGTCATAGGGCGATGGCTGCACC 8892 Query 25401 GGAATCAGAACCACATCGGCGGCACGCACGGCCGCGGCTGCCAGTTCGCTCACTTGCGGG 25460 |||||||| || | ||||| || | ||||| | ||||| ||| | | || || Sbjct 8893 GGAATCAGCACGAAGTCGGCCGCCTTGATGGCCGACACGGCCAGGTCGGCCGCCTGGGGC 8952 Query 25461 GCGCCATCAATGACAACCCAATC 25483 || || || || || || |||| Sbjct 8953 GCTCCGTCGATCACGACGAAATC 8975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122080563332134