Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_009240.1 Length=96944 Score E Sequences producing significant alignments: (Bits) Value seq17235 102 5e-17 >seq17235 Length=1135 Score = 102 bits (112), Expect = 5e-17 Identities = 230/341 (67%), Gaps = 6/341 (2%) Strand=Plus/Minus Query 53774 GAAGGTTATGCGTTATCTGTTACAACGATCGTAGATTCTTGTAATCCTTTTCACGGTAAT 53833 ||||||||||| ||| | ||||||| | | ||| |||||||||| | ||| ||| || Sbjct 725 GAAGGTTATGCCTTAGCGATTACAACTTTAGCTGATGCTTGTAATCCGTATCATGGTGAT 666 Query 53834 TT-AGTTTTAGTGACGACTCAAGAATCTTCTTCCGAATACGTATTAATTTGCGAATGTAA 53892 || | ||| | || || | | | || ||||| | | || || | ||||| Sbjct 665 TTTACACTTA-TAACAACAGATGCCACATCGAATGAATATATGATGATATGTAATTGTAA 607 Query 53893 AAACCCCGGTTACATTGGAAACGACAATATTTTAGGTAATTGTACAACTATTTACATATG 53952 ||| || || || ||||| || || ||| | || | ||||||||||| | ||| |||||| Sbjct 606 AAATCCTGGCTATATTGGCAATGAGAATTTATTGGATAATTGTACAAATGTTTTCATATG 547 Query 53953 TAACGGAGAAATCGACGACATTAATAAACC--TCTTAACGAAATAAATTGCATATGTAAT 54010 ||| || |||| || | || || |||| | | || |||| ||||| |||| Sbjct 546 TAATGGCAAAATTGATAATATCGATCAACCGTTGTCAA--AAATTAATTGTCAATGTTCA 489 Query 54011 AAAAGAGAAATAAGCATTAGATATGATGACGGTTTACCTGTTTGTAAAGCGTTATTCGTT 54070 | |||| ||| || | |||||||| || ||||| || ||||| | ||||| || Sbjct 488 GCATATGAAAAAAGTATACGCTATGATGATGGCTTACCAGTATGTAAGGAATTATTAGTA 429 Query 54071 CACGAAGCAAATTCTAAATATTCCGACTGGACAAATTTAGT 54111 |||||| ||| ||| | || ||| | |||||||| Sbjct 428 ATCGAAGCTAATGAATTATACACAGATTGGTCGAATTTAGT 388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 310022405788465