Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_009333.1
Length=137969
Score E
Sequences producing significant alignments: (Bits) Value
seq6120 109 5e-19
>seq6120
Length=7451
Score = 109 bits (120), Expect = 5e-19
Identities = 303/458 (66%), Gaps = 10/458 (2%)
Strand=Plus/Minus
Query 20134 CGGAAAGGGACGTGGAGTG-CGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTGT 20192
||| || || ||||| ||| |||| || ||| | | ||| ||||| || | |||
Sbjct 5065 CGGGAATGGTCGTGG-GTGACGCGCCAACTGTTCCTTCAATGGTTCTATGTGGTTACTGT 5007
Query 20193 AGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAG 20252
||| || ||||| || | |||||||| || || || ||| |||| || || |||||||
Sbjct 5006 AGACATGAGCATCGCCAAGCGTGTGAACGAAGTCTCCCGGTTTAAGGCCCGTCACATGAG 4947
Query 20253 CAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGT 20312
| | ||| || || | || | ||| ||| |||||||| || || |||| |||||| |
Sbjct 4946 CTATCATGTACGTAAGCAGTGCATACGAGGCGATGTTAAAGGGCACACCCAGACCCATAT 4887
Query 20313 CTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACC----GTC--AGCTACATAAAATT 20366
|| | | ||||||||||| || || | |||||| ||| | ||| || ||||
Sbjct 4886 CTGCGCTGCGTTGATACAGCTGGCAAGACAACTCACCGCGTGTCGTTGATACGTAGAATT 4827
Query 20367 GA-CATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425
|| || |||| || || || || | |||||| || | ||| |||||||| ||
Sbjct 4826 GAGCAAGACAA-TGGCATGGTGGCAATGCCATCTGCGGTATATCCAAAGGGTTCCAAGCG 4768
Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAAT 20485
||||||| || | | ||| ||||| | ||| || | | | | ||||
Sbjct 4767 GACATAATAATCCGACGATCCGTTGGATTTGTGCGTATGGTTTCAATCACTTGCTTCAAT 4708
Query 20486 TGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGC 20545
||||||| || || || ||||| ||| | || | | || || ||||||||
Sbjct 4707 TGGTCAACACCTTGTCCGGTATAATCATCGTCGCAGGTCTTATATTTGGCGCCAAAGTGA 4648
Query 20546 CTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTC 20583
| ||| || ||||| || || || || | ||| ||||
Sbjct 4647 CGCCATTGAAAACCATATACCGGACCAAGATCGGCCTC 4610
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 441265364343320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |