Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq12041 91.5 1e-13 seq489 82.4 6e-11 >seq12041 Length=12732 Score = 91.5 bits (100), Expect = 1e-13 Identities = 195/285 (68%), Gaps = 6/285 (2%) Strand=Plus/Minus Query 37827 ACGCACGATCTCTTGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCAT 37886 || |||||| || |||||||| || || | || ||||| |||| | ||| |||||| Sbjct 5060 ACTCACGATGATTTATGGAACGCTGCACAGTTGCAACTTGTAAGCGAAGCTAAAATGCAT 5001 Query 37887 CAGTATATGCGCATGTATTGGTGCAAGAAA-ATTTTGGAATGGTCTGATGATGCTCAGAC 37945 | | |||||||||||||| |||| ||| || | |||||| | || | || | || Sbjct 5000 GGCTTTTTGCGCATGTATTGG-GCAAAAAAGATACTTGAATGGGCAGAA-ACGC-CGGAG 4944 Query 37946 CGCGCTCA--ACTACGCCATTTATCTCAATGATAAGTACAGCTTGGACGGGCGTGATCCC 38003 | ||| | ||||| || || ||||||||||| ||||| || || | ||||| Sbjct 4943 CAGGCTTTGGAATACGCTATACTGCTTAATGATAAGTATAGCTTAGATGGAAGGGATCCG 4884 Query 38004 AACGGTTACGTCGGCTGTTTGTGGTCTATATGCGGGCTACACGATAGAGCCTGGCGCGAG 38063 || |||||||| || || ||||||| || | || |||| || || ||| |||| Sbjct 4883 AATGGTTACGTGGGTTGCATGTGGTCCATTGGTGGTATACATGACCAAGGATGGGCCGAG 4824 Query 38064 ATTCCCATTTACGGCAAGATTCGGTACATGAACTACAACGGATGT 38108 | || | | ||||| | || || ||||| || | |||||| Sbjct 4823 AGGCCTGTCTTTGGCAAAGTGCGCTATATGAATTATCAGGGATGT 4779 >seq489 Length=77466 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/137 (74%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || || |||| ||| || || |||||| ||||||||||| || | Sbjct 4393 ACCACCACGCAGACGGAGTACCAAATGCAGGGTCGACTCCTTTTGAATGTTGTAGTC-GG 4451 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || ||| || | || |||| ||||||||||||||| ||||| ||||| || || | Sbjct 4452 AAAGTGTGCGTCCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGTTGGTCTGGGG 4511 Query 34019 GCACGCTCTCTTTGTCC 34035 | | || |||||||||| Sbjct 4512 GAATGCCCTCTTTGTCC 4528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396968166297346