Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq12041 91.5 1e-13
seq489 82.4 6e-11
>seq12041
Length=12732
Score = 91.5 bits (100), Expect = 1e-13
Identities = 195/285 (68%), Gaps = 6/285 (2%)
Strand=Plus/Minus
Query 37827 ACGCACGATCTCTTGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCAT 37886
|| |||||| || |||||||| || || | || ||||| |||| | ||| ||||||
Sbjct 5060 ACTCACGATGATTTATGGAACGCTGCACAGTTGCAACTTGTAAGCGAAGCTAAAATGCAT 5001
Query 37887 CAGTATATGCGCATGTATTGGTGCAAGAAA-ATTTTGGAATGGTCTGATGATGCTCAGAC 37945
| | |||||||||||||| |||| ||| || | |||||| | || | || | ||
Sbjct 5000 GGCTTTTTGCGCATGTATTGG-GCAAAAAAGATACTTGAATGGGCAGAA-ACGC-CGGAG 4944
Query 37946 CGCGCTCA--ACTACGCCATTTATCTCAATGATAAGTACAGCTTGGACGGGCGTGATCCC 38003
| ||| | ||||| || || ||||||||||| ||||| || || | |||||
Sbjct 4943 CAGGCTTTGGAATACGCTATACTGCTTAATGATAAGTATAGCTTAGATGGAAGGGATCCG 4884
Query 38004 AACGGTTACGTCGGCTGTTTGTGGTCTATATGCGGGCTACACGATAGAGCCTGGCGCGAG 38063
|| |||||||| || || ||||||| || | || |||| || || ||| ||||
Sbjct 4883 AATGGTTACGTGGGTTGCATGTGGTCCATTGGTGGTATACATGACCAAGGATGGGCCGAG 4824
Query 38064 ATTCCCATTTACGGCAAGATTCGGTACATGAACTACAACGGATGT 38108
| || | | ||||| | || || ||||| || | ||||||
Sbjct 4823 AGGCCTGTCTTTGGCAAAGTGCGCTATATGAATTATCAGGGATGT 4779
>seq489
Length=77466
Score = 82.4 bits (90), Expect = 6e-11
Identities = 102/137 (74%), Gaps = 2/137 (1%)
Strand=Plus/Plus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
||| || | ||| || || |||| ||| || || |||||| ||||||||||| || |
Sbjct 4393 ACCACCACGCAGACGGAGTACCAAATGCAGGGTCGACTCCTTTTGAATGTTGTAGTC-GG 4451
Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018
|| ||| || | || |||| ||||||||||||||| ||||| ||||| || || |
Sbjct 4452 AAAGTGTGCGTCCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGTTGGTCTGGGG 4511
Query 34019 GCACGCTCTCTTTGTCC 34035
| | || ||||||||||
Sbjct 4512 GAATGCCCTCTTTGTCC 4528
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396968166297346
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |