Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq17788 127 5e-24 seq489 125 2e-23 seq4404 91.5 3e-13 >seq17788 Length=7208 Score = 127 bits (140), Expect = 5e-24 Identities = 146/195 (75%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||||||||| || | ||| || || || ||||| || ||||| || || || Sbjct 2389 TTCTTTCTGGATATTATAATCAGAGAGTGTTCGACCATCTTCCAACTGTTTGCCAGCAAA 2330 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||| ||||| |||||| ||||| ||||||||||| ||||| || || ||||| || Sbjct 2329 GATTAGACGTTGTTGA---TCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGAC 2273 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| |||| || | ||| || || || ||||| ||||| || || || || || Sbjct 2272 ATTTTCGATAGTGTCCGAAGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTT 2213 Query 288459 GACGAATATCTGCAT 288473 || || |||||||| Sbjct 2212 AACAAAAATCTGCAT 2198 >seq489 Length=77466 Score = 125 bits (138), Expect = 2e-23 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||||| | ||| | || || ||||| || || ||||||| Sbjct 4394 CCACCACGCAGACGGAGTACCAAATGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGGAA 4453 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || |||||||| ||||| | ||| || || || ||||||||||||||||| |||||| Sbjct 4454 AGTGTGCGTCCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGTTG---GTCTGGG 4510 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || ||||| |||||||| || || || || || || || | || | || Sbjct 4511 GGAATGCCCTCTTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCA 4570 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || | || || ||||| ||||| ||||| |||||||||||||||||| Sbjct 4571 ACCTCCAAGGTAATGGTCTTACCGGTGAGAGTTTTGACGAATATCTGCATT 4621 >seq4404 Length=3800 Score = 91.5 bits (100), Expect = 3e-13 Identities = 144/206 (70%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 269180 AATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGTACA 269239 ||||||| || || || |||||||| | | | |||||| | ||| | |||| Sbjct 2881 AATATATTGAGTTTGTCGCTGATCGCCTACTAGTTGAACTCGGCGTGGGCAAAATCTACA 2940 Query 269240 ATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTCT 269299 | | |||||||| ||| | || |||||| | |||||||| || || ||||||||||| | Sbjct 2941 ACACAAAGAATCCATTCACATTCATGGAATTGATTTCGCTGGACGGCAAGACGAACTTTT 3000 Query 269300 TCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGTAATG---AATCCAGAAGACAATA 269356 |||| || || |||| |||||||| ||||||||| || | |||||| Sbjct 3001 TCGAGAAAAAAGTAGGCGAATATCAACGCATGGGTGTAATGTCTAACCGTCTAGACAACG 3060 Query 269357 TTTTTGCCATCGATGATGATTTTTAA 269382 ||||| | | |||| ||| |||||| Sbjct 3061 TTTTTACTTTGGATGCTGACTTTTAA 3086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179360078807694