Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq17788 127 5e-24
seq489 125 2e-23
seq4404 91.5 3e-13
>seq17788
Length=7208
Score = 127 bits (140), Expect = 5e-24
Identities = 146/195 (75%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
|||||| ||||||||||| || | ||| || || || ||||| || ||||| || || ||
Sbjct 2389 TTCTTTCTGGATATTATAATCAGAGAGTGTTCGACCATCTTCCAACTGTTTGCCAGCAAA 2330
Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398
||| ||||| |||||| ||||| ||||||||||| ||||| || || ||||| ||
Sbjct 2329 GATTAGACGTTGTTGA---TCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGAC 2273
Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458
||||| |||| || | ||| || || || ||||| ||||| || || || || ||
Sbjct 2272 ATTTTCGATAGTGTCCGAAGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTT 2213
Query 288459 GACGAATATCTGCAT 288473
|| || ||||||||
Sbjct 2212 AACAAAAATCTGCAT 2198
>seq489
Length=77466
Score = 125 bits (138), Expect = 2e-23
Identities = 167/231 (72%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | ||||| | ||| | || || ||||| || || |||||||
Sbjct 4394 CCACCACGCAGACGGAGTACCAAATGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGGAA 4453
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| |||||||| ||||| | ||| || || || ||||||||||||||||| ||||||
Sbjct 4454 AGTGTGCGTCCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGTTG---GTCTGGG 4510
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || ||||| |||||||| || || || || || || || | || | ||
Sbjct 4511 GGAATGCCCTCTTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCA 4570
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
|| || | || || ||||| ||||| ||||| ||||||||||||||||||
Sbjct 4571 ACCTCCAAGGTAATGGTCTTACCGGTGAGAGTTTTGACGAATATCTGCATT 4621
>seq4404
Length=3800
Score = 91.5 bits (100), Expect = 3e-13
Identities = 144/206 (70%), Gaps = 3/206 (1%)
Strand=Plus/Plus
Query 269180 AATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGTACA 269239
||||||| || || || |||||||| | | | |||||| | ||| | ||||
Sbjct 2881 AATATATTGAGTTTGTCGCTGATCGCCTACTAGTTGAACTCGGCGTGGGCAAAATCTACA 2940
Query 269240 ATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTCT 269299
| | |||||||| ||| | || |||||| | |||||||| || || ||||||||||| |
Sbjct 2941 ACACAAAGAATCCATTCACATTCATGGAATTGATTTCGCTGGACGGCAAGACGAACTTTT 3000
Query 269300 TCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGTAATG---AATCCAGAAGACAATA 269356
|||| || || |||| |||||||| ||||||||| || | ||||||
Sbjct 3001 TCGAGAAAAAAGTAGGCGAATATCAACGCATGGGTGTAATGTCTAACCGTCTAGACAACG 3060
Query 269357 TTTTTGCCATCGATGATGATTTTTAA 269382
||||| | | |||| ||| ||||||
Sbjct 3061 TTTTTACTTTGGATGCTGACTTTTAA 3086
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179360078807694
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |