Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq13721 87.8 2e-12
seq18258 84.2 2e-11
seq6039 84.2 2e-11
seq6484 82.4 8e-11
seq6010 82.4 8e-11
seq5906 82.4 8e-11
seq5001 82.4 8e-11
seq3864 82.4 8e-11
seq2300 82.4 8e-11
seq1133 82.4 8e-11
>seq13721
Length=14796
Score = 87.8 bits (96), Expect = 2e-12
Identities = 66/78 (85%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061
|||| |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||
Sbjct 3021 ATTTACTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAAC 3080
Query 57062 CACTATACTACCGAGGAT 57079
|||||||||| |||||||
Sbjct 3081 CACTATACTATCGAGGAT 3098
Score = 84.2 bits (92), Expect = 2e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 11812 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 11871
Query 57066 ATACTACCGAGGAT 57079
|||||| |||||||
Sbjct 11872 ATACTATCGAGGAT 11885
>seq18258
Length=2218
Score = 84.2 bits (92), Expect = 2e-11
Identities = 67/80 (84%), Gaps = 2/80 (3%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 358 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 299
Query 57067 TACTACCGAGGA--TTGAAT 57084
||||| |||||| ||||||
Sbjct 298 TACTATCGAGGATGTTGAAT 279
>seq6039
Length=17770
Score = 84.2 bits (92), Expect = 2e-11
Identities = 66/79 (84%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062
||| |||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||
Sbjct 7928 TTTACTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACC 7987
Query 57063 ACTATACTACCGAGGATTG 57081
||||||||| |||||| ||
Sbjct 7988 ACTATACTATCGAGGACTG 8006
>seq6484
Length=17301
Score = 82.4 bits (90), Expect = 8e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 3181 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 3122
Query 57067 TACTACCGAGGAT 57079
||||| |||||||
Sbjct 3121 TACTATCGAGGAT 3109
>seq6010
Length=23151
Score = 82.4 bits (90), Expect = 8e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 9299 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 9240
Query 57067 TACTACCGAGGATTG 57081
||||| |||||| ||
Sbjct 9239 TACTATCGAGGACTG 9225
>seq5906
Length=4660
Score = 82.4 bits (90), Expect = 8e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 636 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 695
Query 57067 TACTACCGAGGATTG 57081
||||| |||||| ||
Sbjct 696 TACTATCGAGGACTG 710
>seq5001
Length=39483
Score = 82.4 bits (90), Expect = 8e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 1450 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 1391
Query 57067 TACTACCGAGGAT 57079
||||| |||||||
Sbjct 1390 TACTATCGAGGAT 1378
>seq3864
Length=45110
Score = 82.4 bits (90), Expect = 8e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 22402 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 22343
Query 57067 TACTACCGAGGAT 57079
||||| |||||||
Sbjct 22342 TACTATCGAGGAT 22330
Score = 82.4 bits (90), Expect = 8e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 22713 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 22772
Query 57067 TACTACCGAGGAT 57079
||||| |||||||
Sbjct 22773 TACTATCGAGGAT 22785
>seq2300
Length=28033
Score = 82.4 bits (90), Expect = 8e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 5058 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 5117
Query 57067 TACTACCGAGGAT 57079
||||| |||||||
Sbjct 5118 TACTATCGAGGAT 5130
>seq1133
Length=8192
Score = 82.4 bits (90), Expect = 8e-11
Identities = 66/79 (84%), Gaps = 2/79 (3%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 474 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 533
Query 57067 TACTACCGAGGA--TTGAA 57083
||||| |||||| |||||
Sbjct 534 TACTATCGAGGACCTTGAA 552
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543080575214320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |