Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1169 147 2e-30 seq489 120 3e-22 seq17788 89.7 5e-13 >seq1169 Length=8375 Score = 147 bits (162), Expect = 2e-30 Identities = 591/922 (64%), Gaps = 13/922 (1%) Strand=Plus/Plus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCAC 154646 || ||||| ||||| || |||||||| || | | |||| |||||||||| ||| Sbjct 1740 GATGCCAAATTGCATACCGCAATTTCATCTGGTGCAGAATATTCTACAATTTCTGTGCAT 1799 Query 154647 AAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCT 154706 |||||||||||| ||||||||| | |||| || || ||| | || |||| ||| Sbjct 1800 AAATTACTGCATTTAATGGTGCCAACATTTTGTTGGTTGCTTTTTCTATTACATGAATCT 1859 Query 154707 TTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTG--TGCGAAACA 154764 || |||| || || || ||||| ||||| ||||| | |||||| || | | ||| | Sbjct 1860 TTAAACAACATATATGGAGTGCCAGTTTCTACTTGAGCTTCAATTATAGAAAACCAAAGA 1919 Query 154765 GACTTCGCGCCTCAACTTGACAAGTAAATCGATTTTCGCTCTCATATTGTTCGTACAGTT 154824 || | | || | || || | | | ||| ||| ||||||| ||| || | | Sbjct 1920 GA--TTGTGCTTTAATTTTTCTACTTGCGCGACCTTCTTGTTCATATTTTTCATATAACT 1977 Query 154825 TTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGGACACATCAATG 154884 |||||||||| || | || || | || || || | |||||||| | || Sbjct 1978 TTTCAAACTCGTCACCCCAAACATCATGAAGGCCAGGGCATTTATGAGGACACATAAGTG 2037 Query 154885 ACCACATTTCG-TTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTAC 154943 ||||| | ||| | || | ||| ||||||||||| | || || | ||| | |||||| Sbjct 2038 ACCAC-TCTCGATCTTCCTCTACTCGTTTCATAAAAAGGTCTGGAATCCAAAGAGCGTAA 2096 Query 154944 AACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAAATCA 155003 || |||||||| || | | ||||| || | ||| |||| || ||| || || Sbjct 2097 AATAAATCACGAGCTCTGTGTTCTTCCTTTCCAGTATTTTTTTTTAGATCCAAGAACTCG 2156 Query 155004 TATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGTTTT----CC 155059 | ||||| || ||||| ||||||||||| | || | || || || | || || Sbjct 2157 AAAATGTCTGCATGCCAAGGCTCTAAATAAATAGCAAATGCTCC-AGGCCTCTTACCACC 2215 Query 155060 TCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCACGCCGCT 155119 ||||||||| || | || | |||||| | || | | || ||| | | || | Sbjct 2216 TCCTTGATCTACATATCGTGCGACATTATTAAAAACTCTAAGCATTGGCACAAGTCCATT 2275 Query 155120 GGCCGTGCCGTTGGTGCCACGTATCGCGCTGCCGCGAGCACGCGCTTTATGAACATTAAC 155179 | || || || || || || | | || |||||| ||||||||| | Sbjct 2276 CGATGTACCATTAGTTCCCGAAATTGAAGTACCCTTAGCACGAATGCAATGAACATTTAT 2335 Query 155180 GCCCAAACCTCCGCCGTATTTAGATATTTGCGCACAGTCCGCCAAAGTTTCGTACATTCC 155239 || | || ||| | |||| ||||| |||||| | | | || || | || || Sbjct 2336 ACCTATTCCACCGGCAGATTTTGATATCATCGCACATTGTTCTACAGATTTAAAAATGCC 2395 Query 155240 TTTGATGCTGTCTTCTTTCAACGTCAACAAGAAACACGAAGATAATTGAGGTTGAGGGCA 155299 || || || || || || || | ||||| ||||||| ||| || || | Sbjct 2396 TTCTATAGAATCCGCTACCATTGTTAAAAGAAAACATGAAGATAGTTGCGGACGATTGGT 2455 Query 155300 GCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACATTTTGTT-GGCGGTTAAGTTGT 155358 | || ||||| || ||||| || || || || | ||| | || || | Sbjct 2456 TGCAGCAGCAAACAAAGTAGGTGATGCATGCGTGAA-GTAACGTTCCGAAAGTAGATTAT 2514 Query 155359 AAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGATCGCCACGCGCATCAGCA 155418 ||||||| || || || ||||| || |||||||||||| ||||| || ||||| | || Sbjct 2515 AAGTTTCTATTGCTGCATCAATATCCTCACCGTGTATACCAATCGCAACACGCATTAACA 2574 Query 155419 TGTGTTGAATGCGCTCCGCAACGCGGCCGTTGATGCGCTTTAAGTACCCATTTTCCAAAG 155478 |||||||| | ||| || | ||||| || ||| ||| |||||||| Sbjct 2575 TGTGTTGAGGTCTCTCAGCGATCTTTCCGTTTATTTTTAATAAATACGATCGTTCCAAAG 2634 Query 155479 TTTTATACGCAAAATACTTGTA 155500 ||||| | ||||||| || || Sbjct 2635 TTTTAAATCCAAAATAGTTATA 2656 >seq489 Length=77466 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | || || | ||| | ||||| || |||||||||||||| || | Sbjct 4393 ACCACCACGCAGACGGAGTACCAAATGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGGA 4452 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | ||||| || |||||||||||| | || || ||||| ||||| || || Sbjct 4453 AAGTGTGCGTCCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGTTGGTCTGGGGG 4512 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || ||||| || || || || ||| ||| ||| | || ||| | || || Sbjct 4513 AATGCCCTCTTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCAAC 4572 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||| ||||| | |||||| ||||| || |||||||| Sbjct 4573 CTCCAAGGTAATGGTCTTACCGGTGAGAGTTTTGACGAATATCTGCATTTT 4623 >seq17788 Length=7208 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||||||||| || || || ||||| | || || || | ||||| | ||| ||||| Sbjct 2394 GTCGATTCTTTCTGGATATTATAATCAGAGAGTGTTCGACCATCTTCCAACTGTTTGCCA 2335 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || || || || || || ||||||||||||||||| || || | | || ||||| Sbjct 2334 GCAAAGATTAGACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCCTG-AATCTTGGCTTT 2276 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | || || | || || || | ||| | |||||| || || | || Sbjct 2275 GACATTTTCGATAGTGTCCGAAGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGT 2216 Query 64426 TTTTACGAAAATTTGCATTTT 64446 ||| || ||||| ||||| || Sbjct 2215 TTTAACAAAAATCTGCATGTT 2195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499523180210120