Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_011273.1 Length=164602 Score E Sequences producing significant alignments: (Bits) Value seq12641 114 1e-20 >seq12641 Length=70532 Score = 114 bits (126), Expect = 1e-20 Identities = 601/943 (64%), Gaps = 16/943 (2%) Strand=Plus/Plus Query 155935 GCCATCAACTGGAACCGCGTGATCGACGAGAAGGACGCGGAGGTGTGGAACCGGCTGACC 155994 || || |||||||| ||| | ||||| || ||| || || ||||| || | || Sbjct 61600 GCGATTAACTGGAATCGCATTGAAGACGAAAAAGACTTAGAAGTCTGGAATCGTTTAACG 61659 Query 155995 AACAACTTCTGGCTGCCGGAGAAGATCCCGGTGTCCAATGACGTCCAGTCGTGG-CACCA 156053 || || |||||||||||||| | || | || ||||| | | || ||| || | Sbjct 61660 TCAAATTTTTGGCTGCCGGAGAAAGTGCCACTTTCAAATGATATTCCATCTTGGGCAAC- 61718 Query 156054 GCTGACCGAGGAAGAGCGCCTGATCACCATGCGGGTGTTCACCGGCCTGACGATGCTGGA 156113 ||| || | | |||||| | | ||||| || ||||| || || ||||| | || || Sbjct 61719 GCTAACGGCGCAAGAGCAAGAGCTGACCATTCGTGTGTTTACAGGTTTGACGCTACTTGA 61778 Query 156114 CACCATCCAGGGCACCGTCGGCGCGGTCTCGCTCATCCCGGACGCCATCACCCCGCACGA 156173 || | ||| || || || | | | || || || || | || || ||||| Sbjct 61779 TACGGTACAGAATGTGGTAGGTGCTTTGTGTTTGATTCCAGATGCTGTGACGCCACACGA 61838 Query 156174 GGAGGCGGTGTACACCAACATCGCGTTCATGGAGAGCG-TGCACGCACGCAGCTACTCGA 156232 ||| |||| || ||||| ||| | || ||||| |||| | ||||| || ||| Sbjct 61839 AGAGTCGGTTTATACCAATATCTCTTTTATGGA-AGCGGTACACGCGAAAAGTTACAGTT 61897 Query 156233 ACATCTTCTCGACGCTGTGCTCCACCAAGGAGATCGACGCCGCGTTCCGCTGGTCGGAGG 156292 || || || || || || | ||||| | || | || || |||||| | Sbjct 61898 CAATTTTTTCTACTCTATGTCAGATGAAGGATGTGGATGAAGCATTTCGCTGGAGCATAG 61957 Query 156293 AGAACGCCAACCTGCAGAAGAAGGCTGAGATCGTGCTCAGCTACTACAACGGTGACGACC 156352 | |||| |||||| || ||||| |||| || | | | || || || |||| Sbjct 61958 AAAACGAATTCCTGCAAAACAAGGCAAAGATTGTATTGGGGCATTATCGTGGGGATGACC 62017 Query 156353 CGCTCAAGCGCAAGGTCGCCTCCACGCTGCTGGAGGGCTTCCTGTTCTACAGCGGCTTCT 156412 | | | ||| ||||| ||| | | | ||| || | ||||| ||||| | Sbjct 62018 CTTTAATGCGTAAGGTTGCCAGCGTTTTCTTAGAGTCATTTTTATTCTATTCTGGCTTTT 62077 Query 156413 ACCTGCCGATGTTCTGGTCGTCG-CGAGGCAAGCTCACCAACACCGCCGACATGATCCGG 156471 | |||| |||| |||| || | |||| || | || || || || ||| | ||| | Sbjct 62078 ATTTGCCAATGTACTGGA-GTAGTCGAGCAAAATTGACTAATACGGCGGACTTAATCAGA 62136 Query 156472 CTCATCATCCGGGACGAGGCCGTGCACGGCTACTACATCGGCTACAAGTTCCAGAAGGGC 156531 | || || || || || || |||||||| || ||||| || || || || ||| | | | Sbjct 62137 TTGATTATTCGTGATGAAGCGGTGCACGGTTATTACATTGGTTATAAATTTCAGCAAG-C 62195 Query 156532 CTGGAGAAGGAGACCAAGGCCCGCCAGCAGGAAC---TCAAGGACTACACCTATGAGCTG 156588 || | || | ||| | | | || || ||| | || ||||| | ||||| || Sbjct 62196 CT--ACAATAAAGCCACGCCTAGTCACCAAGAAGAGGTGAAAAACTACGCTTATGAATTG 62253 Query 156589 CTGTTCGAGCTGTTCGACAACGAGCAGGAGTACACCCAGGACCTCTACGACGCCACCGGC 156648 || || ||| || ||||| ||||||| |||| | |||||||| ||| Sbjct 62254 CTTCATGATTTGTATGATAACGAAGTCAAGTACACGGAGGATTTATACGACGCTGTTGGC 62313 Query 156649 CAGACCGAGGACGTGAAGAAGTTCCTGCGGTACAACGGCAACAAGGCCCTGCAGAACCTG 156708 |||||| || || ||||||||| ||| ||||||| ||||||||| | ||| || Sbjct 62314 TGGACCGAAGATGTAAAGAAGTTCTTGCACTACAACGCCAACAAGGCTTTAATGAATTTG 62373 Query 156709 GGCTACGACGCGCTGTTCAGCCGCAGCGACTGCG-ACGTCAACCCGGCCATCCTGAGCG- 156766 || | || || || || || | ||| || | || || ||||| ||| | |||| Sbjct 62374 GGTTTTGAAGCACTCTTTCCTAGCT-CTACTACGGATGTGAATCCGGCAATCTT-AGCGG 62431 Query 156767 CGCTGTCGCCCGGTGGAGACGAGAACCACGACTTCTTCTCGGGGTCGGGCAGCACGTACG 156826 | || ||||| | | || || || || || ||||||||||| || ||| | || | Sbjct 62432 CCCTATCGCCAAGCGCGGATGAAAATCATGATTTCTTCTCGGGTTCTGGCTCGTCATATG 62491 Query 156827 TCATGGCCAAGGGTGTGGTCACCGAAGACGACGACTGGGACTT 156869 |||| | || | || | || | ||| || ||||||||||| Sbjct 62492 TCATTGGTAAAGCTGAAGCTACAGCAGATGAGGACTGGGACTT 62534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526470219366960