Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq489 116 4e-21
seq17788 84.2 2e-11
>seq489
Length=77466
Score = 116 bits (128), Expect = 4e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| ||| | || ||||| | | | ||||||||||||||||||||||||
Sbjct 4394 CCACCACGCAGACGGAGTACCAAATGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGGAA 4453
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || || || ||||| || |||| | |||| |||||||||||||| || ||
Sbjct 4454 AGTGTGCGTCCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGTTGGTCTGGGGGA 4513
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| || |||||||| ||| || || | | || | |||||| | | ||| |||
Sbjct 4514 ATGCCCTCTTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCAACC 4573
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | || ||||| || |||||||| || || ||||||||
Sbjct 4574 TCCAAGGTAATGGTCTTACCGGTGAGAGTTTTGACGAATATCTGCAT 4620
>seq17788
Length=7208
Score = 84.2 bits (92), Expect = 2e-11
Identities = 109/148 (74%), Gaps = 2/148 (1%)
Strand=Plus/Minus
Query 138469 TGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATT 138528
||||| || | | |||||||||| ||||| || ||||| || ||||||||||| ||| |
Sbjct 2343 TGTTTGCCAGCAAAGATTAGACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCC-TGAAT 2285
Query 138529 TTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACC 138587
|| | ||| | | ||| | ||||| | | || ||||| | || | || |||||
Sbjct 2284 CTTGGCTTTGACATTTTCGATAGTGTCCGAAGGTTCGACCTCAAGAGTGATGGTCTTACC 2225
Query 138588 AGTCAGAGTTTTTACAAAAATCTGCATG 138615
|| || ||||| |||||||||||||||
Sbjct 2224 CGTGAGGGTTTTAACAAAAATCTGCATG 2197
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496141603528560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |