Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq489 116 4e-21 seq17788 84.2 2e-11 >seq489 Length=77466 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || ||||| | | | |||||||||||||||||||||||| Sbjct 4394 CCACCACGCAGACGGAGTACCAAATGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGGAA 4453 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || ||||| || |||| | |||| |||||||||||||| || || Sbjct 4454 AGTGTGCGTCCATCTTCCAGTTGCTTGCCGGCAAAGATCAGACGCTGTTGGTCTGGGGGA 4513 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || |||||||| ||| || || | | || | |||||| | | ||| ||| Sbjct 4514 ATGCCCTCTTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCAACC 4573 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || ||||| || |||||||| || || |||||||| Sbjct 4574 TCCAAGGTAATGGTCTTACCGGTGAGAGTTTTGACGAATATCTGCAT 4620 >seq17788 Length=7208 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 138469 TGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATT 138528 ||||| || | | |||||||||| ||||| || ||||| || ||||||||||| ||| | Sbjct 2343 TGTTTGCCAGCAAAGATTAGACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCC-TGAAT 2285 Query 138529 TTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACC 138587 || | ||| | | ||| | ||||| | | || ||||| | || | || ||||| Sbjct 2284 CTTGGCTTTGACATTTTCGATAGTGTCCGAAGGTTCGACCTCAAGAGTGATGGTCTTACC 2225 Query 138588 AGTCAGAGTTTTTACAAAAATCTGCATG 138615 || || ||||| ||||||||||||||| Sbjct 2224 CGTGAGGGTTTTAACAAAAATCTGCATG 2197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496141603528560