Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_011588.1
Length=127615
Score E
Sequences producing significant alignments: (Bits) Value
seq17235 134 1e-26
seq16227 102 7e-17
seq11715 89.7 4e-13
>seq17235
Length=1135
Score = 134 bits (148), Expect = 1e-26
Identities = 267/393 (68%), Gaps = 2/393 (1%)
Strand=Plus/Plus
Query 56859 TTCGACCAATCATCGTATAATTCGTTAGCTTCGTGCACGAGTAGGTCTTTACATACGGGA 56918
||||||||||| ||||||||| ||||||||| || | || || |||||||| ||
Sbjct 394 TTCGACCAATCTGTGTATAATTCATTAGCTTCGATTACTAATAATTCCTTACATACTGGT 453
Query 56919 AGTCCGTCATCGTACCGAATGGTTTTCTGGCGTGATTCGCATACACAATTAATCTCGTTT 56978
| || ||||| || || || |||| | || | ||| ||||||||| |
Sbjct 454 AAGCCATCATCATAGCGTATACTTTTTTCATATGCTGAACATTGACAATTAATTTTTGAC 513
Query 56979 AATGGTTTATTGACATCGTCGACTTTGCCATTACATATAAAGACCGACGTACAATTGCCC 57038
|| |||| || || || || | ||||||||||||||| || || |||||||| ||
Sbjct 514 AACGGTTGATCGATATTATCAATTTTGCCATTACATATGAAAACATTTGTACAATTATCC 573
Query 57039 AATAACGACTCGTTCCCGATATAACCTGGATTCTTGCATGTACAGATCAGCATGTATTCG 57098
||||| ||| || || ||||| || ||||| || || |||| |||| ||| |||||
Sbjct 574 AATAAATTCTCATTGCCAATATAGCCAGGATTTTTACAATTACATATCATCATATATTCA 633
Query 57099 GACGCGTCCGAATTAGCCGTCACCAATGTCATATCGCCATGATACGGGTTACACGCGTCC 57158
|| | || | || | | ||| | ||| ||||||||||| ||||| || ||
Sbjct 634 TTCGATGTGGCATCTGTTGTTATAAGTGTAAAATCACCATGATACGGATTACAAGCATCA 693
Query 57159 GAAATTGTCGTGATGGCGAGAGCATAGCCTTCATCGGCCGTCTG-GTTTTTGGGAATAGT 57217
| | || || || || | ||||| ||||||| || | ||| ||||| || || ||
Sbjct 694 GCTAAAGTTGTAATCGCTAAGGCATAACCTTCATTGGGTG-CTGCATTTTTTGGTATCGT 752
Query 57218 TAGCGTTTCGTTATTCTCGATAAACGGAGTGTC 57250
| ||| | ||||| | ||| | || || ||
Sbjct 753 TGTCGTAACATTATTATTAATATATGGTGTATC 785
>seq16227
Length=1397
Score = 102 bits (112), Expect = 7e-17
Identities = 98/125 (78%), Gaps = 2/125 (2%)
Strand=Plus/Minus
Query 83479 TATATATTGAAAGA--GCGAAACTAGATCGTGGGCGGCATATAACGCTGCAAATTGCTTT 83536
||||||||| || | | |||| |||||| || || |||||||| | ||||||||||||
Sbjct 1389 TATATATTGGAAAAATGTGAAATTAGATCATGCGCTGCATATAAAGATGCAAATTGCTTA 1330
Query 83537 CGCCCGTTTCTACTTAAATCTTGGCTCGACGTAATATACTTATTACATAATTCGAGCATG 83596
|| || || | |||||||||||| || || || ||||| ||||| |||| || | |||
Sbjct 1329 CGTCCATTACGACTTAAATCTTGACTTGATGTTATATATTTATTGCATAGATCTAACATA 1270
Query 83597 TCTTT 83601
|||||
Sbjct 1269 TCTTT 1265
Score = 98.7 bits (108), Expect = 8e-16
Identities = 145/204 (71%), Gaps = 11/204 (5%)
Strand=Plus/Minus
Query 84101 TGGTTCATACCCTTCGACTGTTGATCCGAAATCATCGTAA---------CTTGATCGGTG 84151
|| || | ||| ||||| ||||||||||| ||| | ||| || ||| ||
Sbjct 655 TGATTAAAACCTTTCGATTGTTGATCCGATATCGTTGTACAATTTATGCCTGGATTTGTA 596
Query 84152 TGCCGTTGCACCGAACAAACGTACATGCACGTCTGTAAAATGGATGGATCGCGTTTCACG 84211
| ||| | ||||||||||||||||| ||| ||||||| |||||||| ||||||||
Sbjct 595 TTGCGTATAATTGAACAAACGTACATGCATGTCGGTAAAATCGATGGATCACGTTTCACC 536
Query 84212 ATAACCAGATCCAAATCGAAACCGTCCGCCTCGAGCATATCGTAC-ATTTTAGTCGGCAA 84270
||| ||| ||||||||| |||| | || | | ||| ||| | ||| || |||||
Sbjct 535 ATAGCCAAATCCAAATCATAACCATTTTGTTCCAATAAATCATACAAATTTTGT-GGCAA 477
Query 84271 AACGACCGCATAATACGGGATAGT 84294
|| |||| |||||| || || ||
Sbjct 476 TACAACCGAATAATATGGTATTGT 453
>seq11715
Length=1673
Score = 89.7 bits (98), Expect = 4e-13
Identities = 115/157 (73%), Gaps = 4/157 (3%)
Strand=Plus/Plus
Query 125833 TTTAAATTTATTACCGGAGAAGCGTGCTGTTGTAAAACGACCATTATCGACAAACT--AA 125890
||||| ||||| || ||| |||| |||||||||||||| | || | | ||| | ||
Sbjct 34 TTTAAGTTTATAACTGGACAAGCATGCTGTTGTAAAACTTCGATATTAAATAAATTGGAA 93
Query 125891 CCGAACTGGGATGGAAAAAATACAGTCGTGGTGATATCGGCTCGTTTAGCGGAAAATCAA 125950
||| |||| ||| |||| ||||| || ||| |||| || ||||| || ||||||
Sbjct 94 TCGA--TGGGTTGGCGTAAATTTAGTCGCGGCGATGTCGGTTCATTTAGTGGCAAATCAT 151
Query 125951 ACAATCCTGCGGCCATTGGCAATCTACATGCAGCATT 125987
| ||| || || ||||| ||| | |||||||||||
Sbjct 152 CAAGTCCAGCTGCTATTGGTAATATGCATGCAGCATT 188
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408146312789528
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |