Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_011588.1 Length=127615 Score E Sequences producing significant alignments: (Bits) Value seq17235 134 1e-26 seq16227 102 7e-17 seq11715 89.7 4e-13 >seq17235 Length=1135 Score = 134 bits (148), Expect = 1e-26 Identities = 267/393 (68%), Gaps = 2/393 (1%) Strand=Plus/Plus Query 56859 TTCGACCAATCATCGTATAATTCGTTAGCTTCGTGCACGAGTAGGTCTTTACATACGGGA 56918 ||||||||||| ||||||||| ||||||||| || | || || |||||||| || Sbjct 394 TTCGACCAATCTGTGTATAATTCATTAGCTTCGATTACTAATAATTCCTTACATACTGGT 453 Query 56919 AGTCCGTCATCGTACCGAATGGTTTTCTGGCGTGATTCGCATACACAATTAATCTCGTTT 56978 | || ||||| || || || |||| | || | ||| ||||||||| | Sbjct 454 AAGCCATCATCATAGCGTATACTTTTTTCATATGCTGAACATTGACAATTAATTTTTGAC 513 Query 56979 AATGGTTTATTGACATCGTCGACTTTGCCATTACATATAAAGACCGACGTACAATTGCCC 57038 || |||| || || || || | ||||||||||||||| || || |||||||| || Sbjct 514 AACGGTTGATCGATATTATCAATTTTGCCATTACATATGAAAACATTTGTACAATTATCC 573 Query 57039 AATAACGACTCGTTCCCGATATAACCTGGATTCTTGCATGTACAGATCAGCATGTATTCG 57098 ||||| ||| || || ||||| || ||||| || || |||| |||| ||| ||||| Sbjct 574 AATAAATTCTCATTGCCAATATAGCCAGGATTTTTACAATTACATATCATCATATATTCA 633 Query 57099 GACGCGTCCGAATTAGCCGTCACCAATGTCATATCGCCATGATACGGGTTACACGCGTCC 57158 || | || | || | | ||| | ||| ||||||||||| ||||| || || Sbjct 634 TTCGATGTGGCATCTGTTGTTATAAGTGTAAAATCACCATGATACGGATTACAAGCATCA 693 Query 57159 GAAATTGTCGTGATGGCGAGAGCATAGCCTTCATCGGCCGTCTG-GTTTTTGGGAATAGT 57217 | | || || || || | ||||| ||||||| || | ||| ||||| || || || Sbjct 694 GCTAAAGTTGTAATCGCTAAGGCATAACCTTCATTGGGTG-CTGCATTTTTTGGTATCGT 752 Query 57218 TAGCGTTTCGTTATTCTCGATAAACGGAGTGTC 57250 | ||| | ||||| | ||| | || || || Sbjct 753 TGTCGTAACATTATTATTAATATATGGTGTATC 785 >seq16227 Length=1397 Score = 102 bits (112), Expect = 7e-17 Identities = 98/125 (78%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 83479 TATATATTGAAAGA--GCGAAACTAGATCGTGGGCGGCATATAACGCTGCAAATTGCTTT 83536 ||||||||| || | | |||| |||||| || || |||||||| | |||||||||||| Sbjct 1389 TATATATTGGAAAAATGTGAAATTAGATCATGCGCTGCATATAAAGATGCAAATTGCTTA 1330 Query 83537 CGCCCGTTTCTACTTAAATCTTGGCTCGACGTAATATACTTATTACATAATTCGAGCATG 83596 || || || | |||||||||||| || || || ||||| ||||| |||| || | ||| Sbjct 1329 CGTCCATTACGACTTAAATCTTGACTTGATGTTATATATTTATTGCATAGATCTAACATA 1270 Query 83597 TCTTT 83601 ||||| Sbjct 1269 TCTTT 1265 Score = 98.7 bits (108), Expect = 8e-16 Identities = 145/204 (71%), Gaps = 11/204 (5%) Strand=Plus/Minus Query 84101 TGGTTCATACCCTTCGACTGTTGATCCGAAATCATCGTAA---------CTTGATCGGTG 84151 || || | ||| ||||| ||||||||||| ||| | ||| || ||| || Sbjct 655 TGATTAAAACCTTTCGATTGTTGATCCGATATCGTTGTACAATTTATGCCTGGATTTGTA 596 Query 84152 TGCCGTTGCACCGAACAAACGTACATGCACGTCTGTAAAATGGATGGATCGCGTTTCACG 84211 | ||| | ||||||||||||||||| ||| ||||||| |||||||| |||||||| Sbjct 595 TTGCGTATAATTGAACAAACGTACATGCATGTCGGTAAAATCGATGGATCACGTTTCACC 536 Query 84212 ATAACCAGATCCAAATCGAAACCGTCCGCCTCGAGCATATCGTAC-ATTTTAGTCGGCAA 84270 ||| ||| ||||||||| |||| | || | | ||| ||| | ||| || ||||| Sbjct 535 ATAGCCAAATCCAAATCATAACCATTTTGTTCCAATAAATCATACAAATTTTGT-GGCAA 477 Query 84271 AACGACCGCATAATACGGGATAGT 84294 || |||| |||||| || || || Sbjct 476 TACAACCGAATAATATGGTATTGT 453 >seq11715 Length=1673 Score = 89.7 bits (98), Expect = 4e-13 Identities = 115/157 (73%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 125833 TTTAAATTTATTACCGGAGAAGCGTGCTGTTGTAAAACGACCATTATCGACAAACT--AA 125890 ||||| ||||| || ||| |||| |||||||||||||| | || | | ||| | || Sbjct 34 TTTAAGTTTATAACTGGACAAGCATGCTGTTGTAAAACTTCGATATTAAATAAATTGGAA 93 Query 125891 CCGAACTGGGATGGAAAAAATACAGTCGTGGTGATATCGGCTCGTTTAGCGGAAAATCAA 125950 ||| |||| ||| |||| ||||| || ||| |||| || ||||| || |||||| Sbjct 94 TCGA--TGGGTTGGCGTAAATTTAGTCGCGGCGATGTCGGTTCATTTAGTGGCAAATCAT 151 Query 125951 ACAATCCTGCGGCCATTGGCAATCTACATGCAGCATT 125987 | ||| || || ||||| ||| | ||||||||||| Sbjct 152 CAAGTCCAGCTGCTATTGGTAATATGCATGCAGCATT 188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408146312789528