Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_011589.1
Length=40287
Score E
Sequences producing significant alignments: (Bits) Value
seq12138 147 6e-31
seq6575 125 2e-24
>seq12138
Length=25834
Score = 147 bits (162), Expect = 6e-31
Identities = 489/754 (65%), Gaps = 20/754 (3%)
Strand=Plus/Plus
Query 3719 TCCCGGCCCGATGATGTATGCGCTACCGGGCGAGGTGTCCATGAACAAATGGATTGCCCA 3778
||||||||| || ||| ||| || || | ||||| ||||||||||||||| || | ||
Sbjct 2885 TCCCGGCCCAATCATGGTTGCCCTGCCAGCAGAGGTATCCATGAACAAATGGGTTTCGCA 2944
Query 3779 GAAGCTCAACCCCATGATCGAGGTCTGTGCAGCGGTCAAGAAGGCGCTGACCAGCACCGC 3838
|| || ||||| ||||| || | || | || || || || |||| | ||| ||
Sbjct 2945 AAAACTTAACCCAATGATTGAAGAATGCTCTGCTGTAAAAAAAACGCTTGCGAGCGTAGC 3004
Query 3839 CAGCCGCGACAGCGCCAACCAGCGCACGTTTAAGGACTTCGCCGGCGGCCAGCTGTTCGT 3898
|| |||||| ||||| ||||| || || ||||| || ||||| || |||| | |
Sbjct 3005 AAGTCGCGACGCAGCCAATACCCGCACATTCAAAGACTTTGCAGGCGGGCAACTGTACAT 3064
Query 3899 GGAGCACATGGGCAGCCCGCAGCGCCTGAAGTCCTCGACGGTGAAGTACCTGCAGGTGGA 3958
|||||| || ||||| ||||| || ||| | | ||||| | ||| ||| ||
Sbjct 3065 GGAGCATGCCGGTAGCCCATCACGCCTTAAATCCACCAGTGTGAAAACCTTGCTGGTTGA 3124
Query 3959 TGAGATCGATG-AGGCGCCGCAGCAGCTCTCC-ACTGGCGACGATCCGGTGAAGATGCTG 4016
||| | |||| | | || || | || | |||||| || | | |||||
Sbjct 3125 TGAAGTGGATGAATTTGTTGC--CAATTTACCAAGCAACGACGACCCTATTGACATGCTA 3182
Query 4017 GACGGCCGTA-CATCGTCGTTCCCGACCACCTACAAGCGGCAGTACATCAGCACCCCTGG 4075
||||||| || | | |||||| || |||||| | | | || ||| ||
Sbjct 3183 TTAGGCCGTACCAGTGCCTTTCCCG-GCAGCTACAAACACCTATTTATTTCCACACCACA 3241
Query 4076 CATCGCCGGGCTCAGCCGGATTGCGAAGCTGTACGACAAGAGCGATCAGCGTCGGTATCA 4135
||| || | ||||| |||| | |||| || | |||||||||| || ||
Sbjct 3242 AATCAAAGGCATTAGCCGTATTGATAGCCTGTTTGAAGACTCAGATCAGCGTCACTACCA 3301
Query 4136 CGTGCCGTGTCCCCACTGCGGCCACTTCCAGGCGCTGCAGTGGAGCGGCCTGGTGTGGGC 4195
|| || || || || ||||| |||| ||| || |||||| || ||| ||| |
Sbjct 3302 TGTACCATGCCCACATTGCGGTCACTACCAACATCTTGAGTGGAAAGGACTGCATTGGTC 3361
Query 4196 -------GCCCGACAAGAGTCACGCATGGTATGCGTGCTGTGAGTGCGGCGTCGCGATCG 4248
|| |||| || |||||||||| ||| || |||||| | |||
Sbjct 3362 TGAAAATGC---ACAA----CAAGCATGGTATGTCTGCAAAGAATGCGGCAGCTTAATCC 3414
Query 4249 AGGAGCACTTCAAGACAGAGATGATTGCGAAGGGGCGCTGGGTCGCCGCCAATCCTGAAT 4308
| ||||| ||| || ||||| || || || ||||| || || ||||
Sbjct 3415 AAGAGCAGCACAAAACCACCATGATAGCTGCAGGACGTTGGGTAGCACATAACCCTGGTC 3474
Query 4309 CGCCCATCCGCGGCTACACCATCAACTGCCTGTACTACCAGTTTGGCCTGGGTCCACGCT 4368
|||| || |||||| | | |||||||| ||||||| ||||| || || |||||||
Sbjct 3475 ATCCCAATCGTGGCTACCACCTTAACTGCCTTTACTACCCATTTGGGCTTGGGCCACGCT 3534
Query 4369 GGCTGGACCTGGTAAAAGAGTGGCTGGAGGCGCAGGGCGATCCAGCTTCCCTCAAGACCT 4428
|| | || | | || ||||||| || ||||| ||| || || ||||| ||||
Sbjct 3535 GGGTAGAGTTAGCGCAAAAGTGGCTAGAAGCGCAAAACGACCCTGCCAAACTCAAAACCT 3594
Query 4429 TCGTGAACGACCGTCTGGCCGAGACGTGGGAAGA 4462
| | |||||||| || ||||||| ||||||||
Sbjct 3595 TTATCAACGACCGCCTCGCCGAGAGTTGGGAAGA 3628
>seq6575
Length=10722
Score = 125 bits (138), Expect = 2e-24
Identities = 182/257 (71%), Gaps = 0/257 (0%)
Strand=Plus/Minus
Query 1675 GCCCTAGAAGACAAGTTCAACGATTGGGCAAGCCGCAAGCTGTTCCTGCTGGCCGACGAA 1734
|| || ||||| ||||| ||||||||||| |||| |||||||| | | || || ||
Sbjct 1043 GCGCTGGAAGATAAGTTTAACGATTGGGCTAGCCATAAGCTGTTGGTAATTGCAGATGAG 984
Query 1735 GTGGTTGCACGCACCGAGGTCTACCACCTCAAGAACAAGCTCAAGGCGCTGATCACCGGC 1794
||| | ||||| | || | |||| | || || || || || | || || ||
Sbjct 983 GTGTTATCACGCTCTGAAGCTTACCGAGTTAAAAATAAACTGAAATGTTTTATTACGGGT 924
Query 1795 GATCGCATCCGCATCAACCCCAAGAACATCCAGGCCTACGAGGAAGACAACCACGCCAAC 1854
|||||||| |||||||||||||| |||| | | ||||| || ||| | ||||||| ||
Sbjct 923 GATCGCATACGCATCAACCCCAAAAACACCAAAGCCTATGAAGAAAAGAACCACGTTAAT 864
Query 1855 CTGGTCTTCCTCTCAAACGAGGCGATGCCGGTCGTGCTGGAAGAGGATGACCGCCGCCAT 1914
| || || | || || | ||||| || ||||||||||| |||||| | || |||
Sbjct 863 GTCGTTTTTTTAAGTAATGAATCTATGCCTGTGGTGCTGGAAGAAGATGACAGGCGGCAT 804
Query 1915 GCGGTGATCTGGACGCC 1931
|| ||| | ||||| ||
Sbjct 803 GCCGTGGTGTGGACACC 787
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 128767016786474
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |