Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_011589.1 Length=40287 Score E Sequences producing significant alignments: (Bits) Value seq12138 147 6e-31 seq6575 125 2e-24 >seq12138 Length=25834 Score = 147 bits (162), Expect = 6e-31 Identities = 489/754 (65%), Gaps = 20/754 (3%) Strand=Plus/Plus Query 3719 TCCCGGCCCGATGATGTATGCGCTACCGGGCGAGGTGTCCATGAACAAATGGATTGCCCA 3778 ||||||||| || ||| ||| || || | ||||| ||||||||||||||| || | || Sbjct 2885 TCCCGGCCCAATCATGGTTGCCCTGCCAGCAGAGGTATCCATGAACAAATGGGTTTCGCA 2944 Query 3779 GAAGCTCAACCCCATGATCGAGGTCTGTGCAGCGGTCAAGAAGGCGCTGACCAGCACCGC 3838 || || ||||| ||||| || | || | || || || || |||| | ||| || Sbjct 2945 AAAACTTAACCCAATGATTGAAGAATGCTCTGCTGTAAAAAAAACGCTTGCGAGCGTAGC 3004 Query 3839 CAGCCGCGACAGCGCCAACCAGCGCACGTTTAAGGACTTCGCCGGCGGCCAGCTGTTCGT 3898 || |||||| ||||| ||||| || || ||||| || ||||| || |||| | | Sbjct 3005 AAGTCGCGACGCAGCCAATACCCGCACATTCAAAGACTTTGCAGGCGGGCAACTGTACAT 3064 Query 3899 GGAGCACATGGGCAGCCCGCAGCGCCTGAAGTCCTCGACGGTGAAGTACCTGCAGGTGGA 3958 |||||| || ||||| ||||| || ||| | | ||||| | ||| ||| || Sbjct 3065 GGAGCATGCCGGTAGCCCATCACGCCTTAAATCCACCAGTGTGAAAACCTTGCTGGTTGA 3124 Query 3959 TGAGATCGATG-AGGCGCCGCAGCAGCTCTCC-ACTGGCGACGATCCGGTGAAGATGCTG 4016 ||| | |||| | | || || | || | |||||| || | | ||||| Sbjct 3125 TGAAGTGGATGAATTTGTTGC--CAATTTACCAAGCAACGACGACCCTATTGACATGCTA 3182 Query 4017 GACGGCCGTA-CATCGTCGTTCCCGACCACCTACAAGCGGCAGTACATCAGCACCCCTGG 4075 ||||||| || | | |||||| || |||||| | | | || ||| || Sbjct 3183 TTAGGCCGTACCAGTGCCTTTCCCG-GCAGCTACAAACACCTATTTATTTCCACACCACA 3241 Query 4076 CATCGCCGGGCTCAGCCGGATTGCGAAGCTGTACGACAAGAGCGATCAGCGTCGGTATCA 4135 ||| || | ||||| |||| | |||| || | |||||||||| || || Sbjct 3242 AATCAAAGGCATTAGCCGTATTGATAGCCTGTTTGAAGACTCAGATCAGCGTCACTACCA 3301 Query 4136 CGTGCCGTGTCCCCACTGCGGCCACTTCCAGGCGCTGCAGTGGAGCGGCCTGGTGTGGGC 4195 || || || || || ||||| |||| ||| || |||||| || ||| ||| | Sbjct 3302 TGTACCATGCCCACATTGCGGTCACTACCAACATCTTGAGTGGAAAGGACTGCATTGGTC 3361 Query 4196 -------GCCCGACAAGAGTCACGCATGGTATGCGTGCTGTGAGTGCGGCGTCGCGATCG 4248 || |||| || |||||||||| ||| || |||||| | ||| Sbjct 3362 TGAAAATGC---ACAA----CAAGCATGGTATGTCTGCAAAGAATGCGGCAGCTTAATCC 3414 Query 4249 AGGAGCACTTCAAGACAGAGATGATTGCGAAGGGGCGCTGGGTCGCCGCCAATCCTGAAT 4308 | ||||| ||| || ||||| || || || ||||| || || |||| Sbjct 3415 AAGAGCAGCACAAAACCACCATGATAGCTGCAGGACGTTGGGTAGCACATAACCCTGGTC 3474 Query 4309 CGCCCATCCGCGGCTACACCATCAACTGCCTGTACTACCAGTTTGGCCTGGGTCCACGCT 4368 |||| || |||||| | | |||||||| ||||||| ||||| || || ||||||| Sbjct 3475 ATCCCAATCGTGGCTACCACCTTAACTGCCTTTACTACCCATTTGGGCTTGGGCCACGCT 3534 Query 4369 GGCTGGACCTGGTAAAAGAGTGGCTGGAGGCGCAGGGCGATCCAGCTTCCCTCAAGACCT 4428 || | || | | || ||||||| || ||||| ||| || || ||||| |||| Sbjct 3535 GGGTAGAGTTAGCGCAAAAGTGGCTAGAAGCGCAAAACGACCCTGCCAAACTCAAAACCT 3594 Query 4429 TCGTGAACGACCGTCTGGCCGAGACGTGGGAAGA 4462 | | |||||||| || ||||||| |||||||| Sbjct 3595 TTATCAACGACCGCCTCGCCGAGAGTTGGGAAGA 3628 >seq6575 Length=10722 Score = 125 bits (138), Expect = 2e-24 Identities = 182/257 (71%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 1675 GCCCTAGAAGACAAGTTCAACGATTGGGCAAGCCGCAAGCTGTTCCTGCTGGCCGACGAA 1734 || || ||||| ||||| ||||||||||| |||| |||||||| | | || || || Sbjct 1043 GCGCTGGAAGATAAGTTTAACGATTGGGCTAGCCATAAGCTGTTGGTAATTGCAGATGAG 984 Query 1735 GTGGTTGCACGCACCGAGGTCTACCACCTCAAGAACAAGCTCAAGGCGCTGATCACCGGC 1794 ||| | ||||| | || | |||| | || || || || || | || || || Sbjct 983 GTGTTATCACGCTCTGAAGCTTACCGAGTTAAAAATAAACTGAAATGTTTTATTACGGGT 924 Query 1795 GATCGCATCCGCATCAACCCCAAGAACATCCAGGCCTACGAGGAAGACAACCACGCCAAC 1854 |||||||| |||||||||||||| |||| | | ||||| || ||| | ||||||| || Sbjct 923 GATCGCATACGCATCAACCCCAAAAACACCAAAGCCTATGAAGAAAAGAACCACGTTAAT 864 Query 1855 CTGGTCTTCCTCTCAAACGAGGCGATGCCGGTCGTGCTGGAAGAGGATGACCGCCGCCAT 1914 | || || | || || | ||||| || ||||||||||| |||||| | || ||| Sbjct 863 GTCGTTTTTTTAAGTAATGAATCTATGCCTGTGGTGCTGGAAGAAGATGACAGGCGGCAT 804 Query 1915 GCGGTGATCTGGACGCC 1931 || ||| | ||||| || Sbjct 803 GCCGTGGTGTGGACACC 787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128767016786474