Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq10147 93.3 5e-14 >seq10147 Length=26039 Score = 93.3 bits (102), Expect = 5e-14 Identities = 247/366 (67%), Gaps = 16/366 (4%) Strand=Plus/Minus Query 175746 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 175805 |||| |||||||||||||| | |||||||| | ||||| || | |||| ||||| Sbjct 13261 AACCAGTGCCAATACCTTCTGCACCGTTCACCAACACCATCGGTATAATTGGTATATACC 13202 Query 175806 AGTCTGGTTCAAT-CGCACGCCCATCATCGTCCAAATAGT-TGA--GCACGGGGTCATCC 175861 | | ||| ||||| ||| ||| |||||| | | || ||| ||| || |||||| Sbjct 13201 AATTTGGCTCAATGCGCTGGCC----ATCGTCAACCTGGTATGACAGCAAAGGATCATCC 13146 Query 175862 CTCGGATCAAAGATTTTACGAGCATCCTTGGTGAGTTTT--GTGAAGATGTACCTCGTTT 175919 ||| | ||| || ||| | | | || || | ||||| || || | | Sbjct 13145 AACGGGTGAAAAATAAGACGTGTAAGC--GGCGACATCAAAGTGAAAATATAACGAGCAC 13088 Query 175920 GAGACGCA-TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGA 175978 | |||| ||||| || || | || || || ||||| ||||| | |||||||| | | Sbjct 13087 TGG-CGCAATCTTTACCGCCAACAAGTCGGGTACCAAACTGACCGCGCGGCTCAAGCAAA 13029 Query 175979 TTGATATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGT-ATCCGCGAGGGA 176037 || || || || || || | | ||| | ||||| || ||||| || || | ||| || Sbjct 13028 TTAATGTTATTCGAACCGACAAAGTTTTGTGCCAAATTAACAATAGTCATTTG-GAGTGA 12970 Query 176038 GACTTCACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTT 176097 ||||||||||||||| || || ||| | || ||||| | | | ||| || ||||| || Sbjct 12969 GACTTCACCGTGATGATATGCTGACATCTCTGCCACTGAACCGGACAATTGTGCCACTTT 12910 Query 176098 CATCTC 176103 | ||| Sbjct 12909 GACCTC 12904 Score = 91.5 bits (100), Expect = 2e-13 Identities = 236/355 (66%), Gaps = 11/355 (3%) Strand=Plus/Minus Query 176642 CCCTTAATGTGTGAACCATCGTTATCCGCATCCGTCATAATCATGAGCCGACCATAGCGA 176701 ||||| || ||||||||||| | |||| ||| ||||||||||| || |||||| || Sbjct 12274 CCCTTGATATGTGAACCATCCTGATCCTGATCTGTCATAATCATTAGTTTACCATAACGC 12215 Query 176702 A---GCTCGGAAACATC--TT----GATAATCCTTACCTTGTTGAAGACCCAAAATCTTC 176752 | || || |||| || |||| | ||| | ||| | ||| | |||||| Sbjct 12214 AATGTCTTTAAATCATCCATTGTAAGATATTTCTTTTTGTATTGCAAACCGATAATCTTG 12155 Query 176753 TTGAGATCATTGAACTCTTGGTTTGATGTGAGTTGCGCCACTGAAGCGTCGCGGACATTT 176812 ||||| ||||| || || ||||||||| | || || || || || ||| Sbjct 12154 CAGAGATTATTGATTTCAGCATTCTCAGTGAGTTGCTTGAATGTTGCCTCACGCACGTTT 12095 Query 176813 TTACACTTCCCGCGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCA 176872 | || ||||| || || || ||||| |||| || |||||| | || || || Sbjct 12094 AACAATTTACCGCGCAGCGGAAAAACACCATAGTAATTACGACCGATAACGCCCAGGCCT 12035 Query 176873 GCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGA- 176931 | || || | | || || |||||||||||||| | || || || ||| | ||| Sbjct 12034 GACACAGCTAATGATTTGGCTGAATCACCCTCCGTTAGAATAAGTGTGCACATAATAGAG 11975 Query 176932 TTGTGCCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAATACCAGTAATTTTG 176986 || | | | || |||| |||||||| ||||| |||||||| || ||| |||| Sbjct 11974 TTCTTAC-TGCCTGCCTCATTCGCATCTTCCAATTTGGGAATGCCTTTAACTTTG 11921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613357864678680