Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq17788 93.3 3e-14 >seq17788 Length=7208 Score = 93.3 bits (102), Expect = 3e-14 Identities = 155/222 (70%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 |||| |||||||||||||| |||||| || ||||||||||| | | || || Sbjct 2412 CGCAAAACCAAATGCAAAGTCGATTCTTTCTGGATATTATAATCAGAGAGTGTTCGACCA 2353 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || ||||| ||||| || |||| |||| ||| || ||||| | || | ||||||||| Sbjct 2352 TCTTCCAACTGTTTGCCAGCAAAGATTAGACGTTGTTGATCTGGAGGAATTCCTTCTTTG 2293 Query 39625 TC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAA 39682 || | || || | | || ||| || ||||| | ||| || || | ||| | Sbjct 2292 TCCTGAATCTTGGCTTTGACATTTTCGATA--GTGTCCGAAGGTTCGACCTCAAGAGTGA 2235 Query 39683 TTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCGT 39724 | || |||||||| | ||||| || || |||||||||| || Sbjct 2234 TGGTCTTACCCGTGAGGGTTTTAACAAAAATCTGCATGTTGT 2193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347287159749809