Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq4404 190 2e-43
seq489 149 6e-31
>seq4404
Length=3800
Score = 190 bits (210), Expect = 2e-43
Identities = 400/592 (68%), Gaps = 7/592 (1%)
Strand=Plus/Minus
Query 132550 TAAAAGTCCGCATCCAAAGTAAAGGTGTCGTCCTTGGC----AAACATCACGCCAAATTT 132605
|||||||| |||||||||||||| || ||| | | | | |||| || || |
Sbjct 3085 TAAAAGTCAGCATCCAAAGTAAAAACGTTGTC-TAGACGGTTAGACATTACACCCATGCG 3027
Query 132606 TTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGT 132665
|||||||||||| || |||||||| ||||| || || || || |||| ||||| |
Sbjct 3026 TTGATATTCGCCTACTTTTTTCTCGAAAAAGTTCGTCTTGCCGTCCAGCGAAATCAATTC 2967
Query 132666 CATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAG 132725
||| || || || || |||||||||| ||| || || || || || ||
Sbjct 2966 CATGAATGTGAATGGATTCTTTGTGTTGTAGATTTTGCCCACGCCGAGTTCAACTAGTAG 2907
Query 132726 CCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACG 132785
| || || || ||||| || |||| |||||| || ||||| | || | |||
Sbjct 2906 GCGATCAGCGACAAACTCAATATATTCCGACATCAGTTTACAATTCATGCCAATCAGGTT 2847
Query 132786 CACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTC 132845
||||||| || ||||| | || ||||| || ||| || || | | ||||||
Sbjct 2846 AACCGGCAATGCATCGGTCAAGAATTCCTGCTCTATTTTGACTGCCTCCGAAATGATTTC 2787
Query 132846 CCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCA-AGCAAAGT 132904
||| ||| | | | || || ||||||||||| | |||||| ||| | ||||||||
Sbjct 2786 AATAATACGCTCTTTGGTTGGACGCTGCACCAAATGATGGAACAT-AAGAACAGCAAAGT 2728
Query 132905 CGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGA 132964
| || || || || || || | ||||| | ||| ||| ||| || || || ||||| |
Sbjct 2727 CACAGTGTAAACCTTCATCACGCGAAATTAATTCATTGGAGAATGTTAAACCAGGCATAA 2668
Query 132965 GGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGA 133024
|||| ||||| || |||||||| |||| || |||||||| |||||| | ||||||||
Sbjct 2667 GGCCACGTTTCTTCAGCCAAAAGATGGACGCAAAACTGCCACTAAAGAATATGCCCTCGA 2608
Query 133025 CGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCA 133084
| || || || || | | | ||| ||||| | ||| ||| | ||||| |
Sbjct 2607 CCGCAGCAAAGGCAATAATTCTCTCACCGAAATTAGCTGATTTCGATGAAATCCAAGAGA 2548
Query 133085 GCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAA 133136
||||||| || ||||| ||| || ||||| || || || || || ||
Sbjct 2547 GCGCCCAATCAGCCTTGCGTTTAACAGCGGGCATGGTCTCAATTGCATTGAA 2496
Score = 165 bits (182), Expect = 8e-36
Identities = 197/265 (74%), Gaps = 2/265 (1%)
Strand=Plus/Minus
Query 133168 TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAG 133227
||||||||||| | ||||||||| ||||| || || |||||||| ||||| |||
Sbjct 2396 TAGGTGTCGATTAAAACGCTATACATTTCGGAGTGCACATTTTCCATGGCAATTTGGAAG 2337
Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTT 133287
|| || ||||| || ||||| ||| || |||||||| |||||||||||||| ||||
Sbjct 2336 CCATAGAAGCAACGTGCCTCAGTCACTTGAACTTCTTGGCTGAAACGCTCGACCAAATTT 2277
Query 133288 TCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGC 133347
|| || || ||||| ||| || || || || |||| ||||||| |||||||| |||
Sbjct 2276 TCATTCACAATGCCATCGGAAGCAGCAAAGAAAGCCAACACGTGCGATATGAAATGACGC 2217
Query 133348 TCGTTGTCGTTCAAGC-GCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGAC 133406
||||| || | |||| |||| || | |||||| ||||| || || ||||| ||
Sbjct 2216 TCGTTATCAGT-AAGCTTAGCCCAATCTGTCAAGTCCTTCGACAGATCTACTTCCTCAAC 2158
Query 133407 GGTCCAAAACGACGCCTCGGCTTTT 133431
||||| || || ||||| || |||
Sbjct 2157 TGTCCAGAATGATGCCTCTGCCTTT 2133
>seq489
Length=77466
Score = 149 bits (164), Expect = 6e-31
Identities = 171/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|||||||| |||||||| ||||| ||||| || || ||||| ||| | || || ||| |
Sbjct 4623 AAAATGCAGATATTCGTCAAAACTCTCACCGGTAAGACCATTACCTTGGAGGTTGAGCCT 4564
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
| |||| | | | | | || | || |||| ||||||||||| |||||| | |||
Sbjct 4563 TCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAAGAGGGCATTCCCCCAGAC 4504
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|||||||| || || | || ||||| || ||||| || | ||||| || |||||||
Sbjct 4503 CAACAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGACGCACACTTTCCGACTAC 4444
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||| |||||||| |||| ||||||||||| || ||| || | || ||
Sbjct 4443 AACATTCAAAAGGAGTCGACCCTGCATTTGGTACTCCGTCTGCGTGGTGG 4394
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500051051688320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |