Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq4404 190 2e-43 seq489 149 6e-31 >seq4404 Length=3800 Score = 190 bits (210), Expect = 2e-43 Identities = 400/592 (68%), Gaps = 7/592 (1%) Strand=Plus/Minus Query 132550 TAAAAGTCCGCATCCAAAGTAAAGGTGTCGTCCTTGGC----AAACATCACGCCAAATTT 132605 |||||||| |||||||||||||| || ||| | | | | |||| || || | Sbjct 3085 TAAAAGTCAGCATCCAAAGTAAAAACGTTGTC-TAGACGGTTAGACATTACACCCATGCG 3027 Query 132606 TTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGT 132665 |||||||||||| || |||||||| ||||| || || || || |||| ||||| | Sbjct 3026 TTGATATTCGCCTACTTTTTTCTCGAAAAAGTTCGTCTTGCCGTCCAGCGAAATCAATTC 2967 Query 132666 CATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAG 132725 ||| || || || || |||||||||| ||| || || || || || || Sbjct 2966 CATGAATGTGAATGGATTCTTTGTGTTGTAGATTTTGCCCACGCCGAGTTCAACTAGTAG 2907 Query 132726 CCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACG 132785 | || || || ||||| || |||| |||||| || ||||| | || | ||| Sbjct 2906 GCGATCAGCGACAAACTCAATATATTCCGACATCAGTTTACAATTCATGCCAATCAGGTT 2847 Query 132786 CACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTC 132845 ||||||| || ||||| | || ||||| || ||| || || | | |||||| Sbjct 2846 AACCGGCAATGCATCGGTCAAGAATTCCTGCTCTATTTTGACTGCCTCCGAAATGATTTC 2787 Query 132846 CCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCA-AGCAAAGT 132904 ||| ||| | | | || || ||||||||||| | |||||| ||| | |||||||| Sbjct 2786 AATAATACGCTCTTTGGTTGGACGCTGCACCAAATGATGGAACAT-AAGAACAGCAAAGT 2728 Query 132905 CGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGA 132964 | || || || || || || | ||||| | ||| ||| ||| || || || ||||| | Sbjct 2727 CACAGTGTAAACCTTCATCACGCGAAATTAATTCATTGGAGAATGTTAAACCAGGCATAA 2668 Query 132965 GGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGA 133024 |||| ||||| || |||||||| |||| || |||||||| |||||| | |||||||| Sbjct 2667 GGCCACGTTTCTTCAGCCAAAAGATGGACGCAAAACTGCCACTAAAGAATATGCCCTCGA 2608 Query 133025 CGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCA 133084 | || || || || | | | ||| ||||| | ||| ||| | ||||| | Sbjct 2607 CCGCAGCAAAGGCAATAATTCTCTCACCGAAATTAGCTGATTTCGATGAAATCCAAGAGA 2548 Query 133085 GCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAA 133136 ||||||| || ||||| ||| || ||||| || || || || || || Sbjct 2547 GCGCCCAATCAGCCTTGCGTTTAACAGCGGGCATGGTCTCAATTGCATTGAA 2496 Score = 165 bits (182), Expect = 8e-36 Identities = 197/265 (74%), Gaps = 2/265 (1%) Strand=Plus/Minus Query 133168 TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAG 133227 ||||||||||| | ||||||||| ||||| || || |||||||| ||||| ||| Sbjct 2396 TAGGTGTCGATTAAAACGCTATACATTTCGGAGTGCACATTTTCCATGGCAATTTGGAAG 2337 Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTT 133287 || || ||||| || ||||| ||| || |||||||| |||||||||||||| |||| Sbjct 2336 CCATAGAAGCAACGTGCCTCAGTCACTTGAACTTCTTGGCTGAAACGCTCGACCAAATTT 2277 Query 133288 TCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGC 133347 || || || ||||| ||| || || || || |||| ||||||| |||||||| ||| Sbjct 2276 TCATTCACAATGCCATCGGAAGCAGCAAAGAAAGCCAACACGTGCGATATGAAATGACGC 2217 Query 133348 TCGTTGTCGTTCAAGC-GCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGAC 133406 ||||| || | |||| |||| || | |||||| ||||| || || ||||| || Sbjct 2216 TCGTTATCAGT-AAGCTTAGCCCAATCTGTCAAGTCCTTCGACAGATCTACTTCCTCAAC 2158 Query 133407 GGTCCAAAACGACGCCTCGGCTTTT 133431 ||||| || || ||||| || ||| Sbjct 2157 TGTCCAGAATGATGCCTCTGCCTTT 2133 >seq489 Length=77466 Score = 149 bits (164), Expect = 6e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| |||||||| ||||| ||||| || || ||||| ||| | || || ||| | Sbjct 4623 AAAATGCAGATATTCGTCAAAACTCTCACCGGTAAGACCATTACCTTGGAGGTTGAGCCT 4564 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| ||||||||||| |||||| | ||| Sbjct 4563 TCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAAGAGGGCATTCCCCCAGAC 4504 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 |||||||| || || | || ||||| || ||||| || | ||||| || ||||||| Sbjct 4503 CAACAGCGTCTGATCTTTGCCGGCAAGCAACTGGAAGATGGACGCACACTTTCCGACTAC 4444 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||||| |||| ||||||||||| || ||| || | || || Sbjct 4443 AACATTCAAAAGGAGTCGACCCTGCATTTGGTACTCCGTCTGCGTGGTGG 4394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500051051688320