Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq18134 158 5e-33 seq5037 154 6e-32 seq1169 136 2e-26 seq1648 129 2e-24 seq17788 122 3e-22 seq1697 114 5e-20 seq8176 107 8e-18 seq4416 84.2 9e-11 >seq18134 Length=7618 Score = 158 bits (174), Expect = 5e-33 Identities = 253/363 (70%), Gaps = 3/363 (1%) Strand=Plus/Minus Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303 ||||| |||||||||||||||||| | |||| ||||| || || || ||| || | Sbjct 4919 CCTGAGGAAATTTCATCTATGGTTTTGTCTAAGATGAAGGAGACCGCCGAAGCCTACTTG 4860 Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363 || | || || |||| || || ||||| |||||||| ||||| ||| | ||||| Sbjct 4859 GGCAAGACCGTGACAAATGCTGTCATCACTGTGCCCGCTTACTTCAACGATTCGCAACGT 4800 Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 ||||| ||||| ||||| || ||||||||||||||||||||| || ||||| || ||| Sbjct 4799 CAAGCGACTAAGGATGCTGGTACTATTGCTGGTTTAAATGTTCTCCGTATTATCAACGAA 4740 Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaT 451483 || || || || ||| | || ||||| || | || || | | | ||| ||| Sbjct 4739 CCCACTGCCGCCGCTATTGCCTATGGTCTTGACAA---GAAGGCCGCTGGTGAACGTAAT 4683 Query 451484 ATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGAT 451543 || | | || ||||| || || || ||| ||| || | || || ||||| || Sbjct 4682 GTTCTCATTTTCGATTTGGGCGGTGGTACTTTCGATGTGTCAATTCTGTCGATTGATGAC 4623 Query 451544 GGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGAT 451603 || | || || || ||| | || |||||| || ||| | || ||||||||| | || Sbjct 4622 GGCATCTTCGAGGTCAAGTCCACGGCTGGTGACACCCATTTGGGTGGTGAAGATTTCGAC 4563 Query 451604 AAT 451606 ||| Sbjct 4562 AAT 4560 >seq5037 Length=32345 Score = 154 bits (170), Expect = 6e-32 Identities = 366/544 (67%), Gaps = 18/544 (3%) Strand=Plus/Plus Query 451065 AATCAATGGTAAATTCAAATGCCAAAAACACAGTATATGATGCTAAACGTTTAATTGGCC 451124 ||||||| | || ||||| || | |||||||||| ||||| |||||||| ||||||| Sbjct 19635 AATCAATTGACAA--CAAATCCCGAGAACACAGTATTCGATGCAAAACGTTTGATTGGCC 19692 Query 451125 GTATGTATGATGATGATAC---TGTACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAG 451181 || | ||| | |||||| ||| ||| | || | |||||||| | | | || | Sbjct 19693 GT--GAATGGTC-TGATACGAATGTCCAACATGACATCAAATTCTTCCCATTCAAGGTGG 19749 Query 451182 TAAATCAAAAAGGAAAGCCCTATATTCAAGT--AAATTATAAAGGTGAAACTAAAACTTT 451239 | | | || |||||| | || || ||| | ||| || ||| || Sbjct 19750 TCGAAAAGAACTCAAAGCCACACATCAGCGTTGAAACGTCACAGGGTAA--TAAGGTATT 19807 Query 451240 TGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATA 451299 || || |||||||| ||| ||||||| | ||| ||||| ||||| || ||| ||| Sbjct 19808 CGCACCGGAAGAAATCTCAGCTATGGTATTGCTTAAGATGAAGGAAACCGCTGAAGCATA 19867 Query 451300 TATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACA 451359 | |||| || || | || || |||| || |||||||| || ||||||||||| Sbjct 19868 TCTTGGCAAGAAGGTGACACACGCTGTCGTTACGGTGCCCGCTTACTTTAATGATGCACA 19927 Query 451360 ACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAA 451419 ||| || || || || ||||| || ||||| ||| || | ||| | || || ||||| Sbjct 19928 ACGTCAGGCGACAAAGGATGCTGGTGTCATTGCCGGTCTACAGGTTATGCGCATCATTAA 19987 Query 451420 TGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaa 451479 ||| || || || |||||| | || ||||| | ||| || || || | || || Sbjct 19988 TGAGCCGACCGCTGCTGCTATTGCCTATGG-TTTGGACAA--GAAGGA---GGGCGAGAA 20041 Query 451480 aaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGA 451539 || |||| || || ||||| || || || ||| |||| || | | | ||||| Sbjct 20042 GAACGTTTTGGTCTTCGATTTGGGCGGTGGTACTTTTGATGTCTCATTGTTGACCATTGA 20101 Query 451540 AGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATAT 451599 |||| ||||| ||||| || ||||| |||||||| ||| | || ||||||||| | Sbjct 20102 TAATGGTGTATTCGAAGTGGTTGCCACCAACGGTGATACACATTTGGGTGGTGAAGATTT 20161 Query 451600 TGAT 451603 ||| Sbjct 20162 CGAT 20165 >seq1169 Length=8375 Score = 136 bits (150), Expect = 2e-26 Identities = 324/483 (67%), Gaps = 15/483 (3%) Strand=Plus/Minus Query 502357 AAAAATATGGAACTAGAAACAGTTTGCTTACAGCACTAATGCCAACAGCATCTACATCTC 502416 |||| |||||| ||||| | ||| ||||| |||||| ||||| |||||| ||| Sbjct 1317 AAAAGTATGGAGTAAGAAATTCCCTCCTTGTAGCACCAATGCCTACAGCTTCTACAGCTC 1258 Query 502417 AACTATTAGGCAATTATGAATCATTTGAACCATTTACTTCTAATATATATACTAGAAGAA 502476 || | | || ||| |||||||||||||||| | ||||| |||||||| || ||||| Sbjct 1257 AAATCATGGGAAATAATGAATCATTTGAACCCTACACTTCAAATATATACACCAGAAGGG 1198 Query 502477 CTTTAGCAGGTGAATTTATAGTTGTTAATAAACATTTAATAAATGATTTGAATGAAATCG 502536 |||| | || || ||| ||||||||| | ||||| || |||||| | |||| | | Sbjct 1197 TTTTATCTGGAGAGTTTCAAGTTGTTAACCATTATTTATTACGTGATTTAACTGAATTGG 1138 Query 502537 GTGAATGGACTAATGAAATTAGACAAAAAGTAATTAATGATAA----TGGTTCTATTCAA 502592 | ||| | |||| || || ||| | || || || || ||||||||||||| Sbjct 1137 ATTTGTGGGATGATGATAT--GAAAAATAATA--TAGTGTCAAGTCGTGGTTCTATTCAA 1082 Query 502593 AATAT---ATTACTACCTAATATAATTAAAAACATCTATCAAACTTCATATGAAATGAAA 502649 |||| | | | ||||| | | | || | ||| ||||| | || || Sbjct 1081 CATATTGAAACAATTCCTAAAGATGTCAGAGACTTATATAAAACTGTCTGGGAGATTTCT 1022 Query 502650 CAAAAATATATAAT--AGATGGATGTTCTATACGGGGAGCTTATATAGATCAAACCCAAT 502707 ||||| | ||| | |||| || ||| | ||||||| || || |||| ||| | Sbjct 1021 GTAAAATCAACAATAAAAATGGCTG-CAGATA-GAGGAGCTTTCATTGACCAAAGCCAGT 964 Query 502708 CTATGAATCTTTATTTTGCACAACCAGACTCTCAAAAATTAACTTCCTCTCAATTTTATG 502767 | | ||| | || | || ||||| | | | ||||| ||||| || |||||| Sbjct 963 CATTCAATATACATGTCGCCGAACCAAATTATGGTAAATTGACTTCAATACACTTTTATT 904 Query 502768 CATGGGAACAAGGATTAAAAACAGGGTTATATTATTTACGTAGCAAACCATCAGCAAATG 502827 ||||| || ||| | ||||| || | ||||||||||| | || || ||||||||| Sbjct 903 CATGGAAAGCAGGTCTTAAAACTGGAATGTATTATTTACGCACAAAGCCGGCAGCAAATG 844 Query 502828 CTA 502830 ||| Sbjct 843 CTA 841 Score = 96.9 bits (106), Expect = 1e-14 Identities = 300/465 (65%), Gaps = 8/465 (2%) Strand=Plus/Minus Query 501060 TTTGCTTTCTATTTAGAACCTCATCATGCGGATATATTTGATTTTTTGGAACTACGAAAA 501119 |||||| | |||||||| ||| ||||| || || || || || ||||| ||| |||| Sbjct 2194 TTTGCTATTTATTTAGAGCCTTGGCATGCAGACATTTTCGAGTTCTTGGATCTAAAAAAA 2135 Query 501120 AATACTGGTGCCGAATCAGAAAGAGCCCGTGATTTATTTTTAGCATTATGGGTTTCTGAC 501179 |||||||| ||| | | ||||| ||||||||||||| || | ||| || | ||| Sbjct 2134 AATACTGGAAAGGAAGAACACAGAGCTCGTGATTTATTTTACGCTCTTTGGATTCCAGAC 2075 Query 501180 TTATTTATGAATCAGGTTAAATTAAATAATGATTGGT-ATTTATTTTGTCCAGACAAAGC 501238 | |||||||| | || | | || || |||| | ||| | ||||| | ||| Sbjct 2074 CTTTTTATGAAACGAGTAGAGGAAGATCGAGAGTGGTCACTTA-TGTGTCCTCATAAATG 2016 Query 501239 ACCAGGATTAAATGATGTATATGGAGATGAATATGAAACTCTTTATTGGAAATATGTATC 501298 || || | ||||||| | || || || | ||||| | ||| ||||||| | Sbjct 2015 CCCTGGCCTTCATGATGTTTGGGGTGACGAGTTTGAAAAGTTATATGAAAAATATGAACA 1956 Query 501299 AGAAGAAAAATNNNNNNNNNNNNNNAAAGCCCGGAAAT---TATGGGAAGCTATAATGAC 501355 ||||| ||||| | ||| | ||| ||||||| Sbjct 1955 AGAAGGTCGCGCAAGTAGAAAAATTAAAGCAC---AATCTCTTTGGTTTTCTATAATTGA 1899 Query 501356 AGCACAGTTTGAAACTGGTTCACCCtatatgttatataaagataatattaataaaaaatc 501415 ||| || | |||||||| | || |||||||| | ||||||| ||||| |||| Sbjct 1898 AGCTCAAGTAGAAACTGGCACTCCATATATGTTGTTTAAAGATTCATGTAATAGAAAAAG 1839 Query 501416 aaaccagaaaaatataggaataatTAGAAGTTCAAATTTATGTGCTGAAATTGTAGAATA 501475 ||||| ||||| | || | |||| | | |||||||| | |||||||||||||| Sbjct 1838 CAACCAACAAAATGTTGGCACCATTAAATGCAGTAATTTATGCACAGAAATTGTAGAATA 1779 Query 501476 TTCAGATTCTACTGAAACAGCTGCTTGTAATTTAGCTTCAATTGC 501520 ||| | | ||||| || | || ||||| || || ||||| Sbjct 1778 TTCTGCACCAGATGAAATTGCGGTATGCAATTTGGCATCGATTGC 1734 >seq1648 Length=58106 Score = 129 bits (142), Expect = 2e-24 Identities = 134/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333 |||||||| || ||||| ||| ||| | | | ||||||| | ||||| |||| Sbjct 33421 AAAATGAAGGAGACAGCCGAAGCTTATTTGAATACACCAGTTAAGAACGCAGTCGTTACA 33362 Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 ||||| ||||||||||| || ||||||| || || ||||||||||| || || || ||| Sbjct 33361 GTTCCAGCTTATTTCAACGACTCACAACGTCAGGCTACTAAAGATGCTGGTCAGATAGCT 33302 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 ||| | ||||||||||| | || ||||| || || || ||||| || |||||||| Sbjct 33301 GGTCTTAATGTTCTTCGCGTCATCAATGAGCCAACCGCTGCTGCCCTTGCATATGG 33246 >seq17788 Length=7208 Score = 122 bits (134), Expect = 3e-22 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| |||||||| || || ||||| || || |||||||| || ||| | || Sbjct 2198 ATGCAGATTTTTGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCTTCG 2257 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || ||| | | ||| || ||||| || || |||||||||||||| |||||| Sbjct 2258 GACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAA 2317 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 |||||| |||| || | || ||||| | |||||||| |||| | | ||||||||| Sbjct 2318 CAACGTCTAATCTTTGCTGGCAAACAGTTGGAAGATGGTCGAACACTCTCTGATTATAAT 2377 Query 391230 AT 391231 || Sbjct 2378 AT 2379 >seq1697 Length=24975 Score = 114 bits (126), Expect = 5e-20 Identities = 182/256 (71%), Gaps = 10/256 (4%) Strand=Plus/Minus Query 451356 CACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTA 451415 |||| || || || || |||||||| ||| ||||||||| | ||||| | ||||| | Sbjct 13490 CACAGCGCCAGGCCACCAAAGATGCTGGATCAATTGCTGGTCTCAATGTGTTGCGAATAA 13431 Query 451416 TTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAG 451475 | ||||| || ||||||||||| || || ||||| || ||| || ||| | || | Sbjct 13430 TAAATGAGCCAACAGCAGCTGCGCTTGCCTATGGTCT-GGATAA--AAATCTTAAAGGCG 13374 Query 451476 aaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTT--C 451533 |||| ||| | || | |||||| ||||||| || || |||| ||| | ||| | Sbjct 13373 AAAAGAATGTCTTGATCTTTGATCTTGGTGGCGGCACATTTGAT--GTCTCCATTTTGAC 13316 Query 451534 AAT---TGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGG 451590 ||| ||||| | |||||||||| || | || ||| ||||| ||| | || || Sbjct 13315 AATCGATGAAGGTTCACTATTTGAAGTTAAATCCACGGCTGGCGATACGCATTTGGGCGG 13256 Query 451591 TGAAGATATTGATAAT 451606 ||||||| |||||||| Sbjct 13255 TGAAGATTTTGATAAT 13240 >seq8176 Length=26989 Score = 107 bits (118), Expect = 8e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 451274 AAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACT 451333 || |||||| |||| |||||| | | | | || | || ||||| ||||| |||||| Sbjct 15125 AAGATGAAAAAAACGGCAGAAGATTTTCTGGGAGAAACCGTAACTGAAGCAGTGATTACT 15184 Query 451334 GTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCT 451393 || || || || || ||||| |||||||| |||||||||||||| ||||| | ||||||| Sbjct 15185 GTACCAGCATACTTTAATGACGCACAACGCCAAGCAACTAAAGACGCAGGGCGTATTGCT 15244 Query 451394 GGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 || | | || || ||||| ||||| || || || || ||| | || | |||| Sbjct 15245 GGGCTGGAAGTCAAGCGCATTATCAATGAGCCAACCGCTGCGGCTTTGGCGTTTGGA 15301 >seq4416 Length=2693 Score = 84.2 bits (92), Expect = 9e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 451217 TATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAA 451276 |||||||| |||| |||| ||| ||| || ||| | || || ||||| || || || Sbjct 1186 TATAAAGGCGAAAAGAAAAGTTTCTTTCCGGAGGAAGTATCCTCAATGGTGCTGACGAAG 1127 Query 451277 ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTT 451336 ||| ||||| || || || | ||| | | || || ||||| || | || || Sbjct 1126 ATGCGTGAAACCGCTGAGGCTTACTTGGGTAATACGGTGACGGATGCCGTGGTCACAGTG 1067 Query 451337 CCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGC 451380 ||||| |||||||||||| |||||||||| || || ||||| || Sbjct 1066 CCCGCCTATTTCAATGATTCACAACGGCAGGCTACAAAAGACGC 1023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975225462581084