Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq11998 100 4e-16
seq10147 95.1 2e-14
>seq11998
Length=46925
Score = 100 bits (110), Expect = 4e-16
Identities = 245/372 (66%), Gaps = 12/372 (3%)
Strand=Plus/Minus
Query 15884 ACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGC 15943
||||||||| || || ||||| | | ||| ||| | ||||| || || |||||
Sbjct 37440 ACGATCAAATCGTCCCGGGCGCAACAAAGCGCTATCCAAAATATCTGGACGGTTAGTTGC 37381
Query 15944 GGCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTT 16003
|| | ||| | | ||| | | | |||||||||||||| || || | |||||
Sbjct 37380 CGCAACGACTATTACACCCAAATTGGTTTCAAAACCATCCATTTCCACTAACATTTGGTT 37321
Query 16004 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCA------GCACTGCGTTGCTT 16057
| ||||| || || || ||||| | ||||||| |||| |||||
Sbjct 37320 CAATGTTTGCTCACGCTCGTCATTACC------ACCACCATGTCCTGCACCACGTTGGCG 37267
Query 16058 TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC 16117
|| ||||| |||||||||||||| || | ||||| || ||||| |||| ||
Sbjct 37266 CCCTACGGCGTCAATCTCATCAATAAAAATAATGCAGGGAGCATTTTTTTTAGCGTTCTC 37207
Query 16118 AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGC 16177
||| | || |||||||| || || || ||||||||||| |||||||||| | | |
Sbjct 37206 AAACATGTCACGTACACGTGCCGCTCCAACGCCAACAAACATTTCCACAAAGTCAGAGCC 37147
Query 16178 GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 16237
||| || || || || || | |||||| ||||||| | || | || || ||
Sbjct 37146 AGAAATACTGAAAAACGGAACCTTTGCTTCACCAGCAATGGATTTTGCCAACAGTGTTTT 37087
Query 16238 ACCCGTACCTGG 16249
|| || |||||
Sbjct 37086 CCCTGTCCCTGG 37075
>seq10147
Length=26039
Score = 95.1 bits (104), Expect = 2e-14
Identities = 238/359 (66%), Gaps = 2/359 (1%)
Strand=Plus/Minus
Query 175839 AACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGA 175898
|||| || || ||||| |||| ||||||||| | ||||| || | |||| || ||
Sbjct 13261 AACCAGTGCCAATACCTTCTGCACCGTTCACCAACACCATCGGTATAATTGGTATATACC 13202
Query 175899 AGTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCG 175958
| | |||||||||| | | ||||||||| || || || | |||||||| ||
Sbjct 13201 AATTTGGCTCAATGCGCTGGCCATCGTCAACCTGGTATGACAGCAAAGGATCATCCAACG 13142
Query 175959 GATCAAAGATCTTTCGGGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGACG 176018
| | ||| || || | | | | | || || ||||| | | | ||
Sbjct 13141 GGTGAAAAATAAGACGTGTAAGCGGCGACATCAAAGTGAAAATATAACGAGCACTGG-CG 13083
Query 176019 CA-TCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 176077
|| || ||||| || | || || |||||||||||||| | ||||||||| | ||| ||
Sbjct 13082 CAATCTTTACCGCCAACAAGTCGGGTACCAAACTGACCGCGCGGCTCAAGCAAATTAATG 13023
Query 176078 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCA 176137
|| || ||||| | ||| | ||||| || ||||| || ||| |||||||||
Sbjct 13022 TTATTCGAACCGACAAAGTTTTGTGCCAAATTAACAATAGTCATTTGGAGTGAGACTTCA 12963
Query 176138 CCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTC 176196
||||| || || || | ||||||| || | | | ||| || |||||||| | |||
Sbjct 12962 CCGTGATGATATGCTGACATCTCTGCCACTGAACCGGACAATTGTGCCACTTTGACCTC 12904
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620591303540560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |