Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq11998 100 4e-16 seq10147 95.1 2e-14 >seq11998 Length=46925 Score = 100 bits (110), Expect = 4e-16 Identities = 245/372 (66%), Gaps = 12/372 (3%) Strand=Plus/Minus Query 15884 ACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGC 15943 ||||||||| || || ||||| | | ||| ||| | ||||| || || ||||| Sbjct 37440 ACGATCAAATCGTCCCGGGCGCAACAAAGCGCTATCCAAAATATCTGGACGGTTAGTTGC 37381 Query 15944 GGCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTT 16003 || | ||| | | ||| | | | |||||||||||||| || || | ||||| Sbjct 37380 CGCAACGACTATTACACCCAAATTGGTTTCAAAACCATCCATTTCCACTAACATTTGGTT 37321 Query 16004 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCA------GCACTGCGTTGCTT 16057 | ||||| || || || ||||| | ||||||| |||| ||||| Sbjct 37320 CAATGTTTGCTCACGCTCGTCATTACC------ACCACCATGTCCTGCACCACGTTGGCG 37267 Query 16058 TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC 16117 || ||||| |||||||||||||| || | ||||| || ||||| |||| || Sbjct 37266 CCCTACGGCGTCAATCTCATCAATAAAAATAATGCAGGGAGCATTTTTTTTAGCGTTCTC 37207 Query 16118 AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGC 16177 ||| | || |||||||| || || || ||||||||||| |||||||||| | | | Sbjct 37206 AAACATGTCACGTACACGTGCCGCTCCAACGCCAACAAACATTTCCACAAAGTCAGAGCC 37147 Query 16178 GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 16237 ||| || || || || || | |||||| ||||||| | || | || || || Sbjct 37146 AGAAATACTGAAAAACGGAACCTTTGCTTCACCAGCAATGGATTTTGCCAACAGTGTTTT 37087 Query 16238 ACCCGTACCTGG 16249 || || ||||| Sbjct 37086 CCCTGTCCCTGG 37075 >seq10147 Length=26039 Score = 95.1 bits (104), Expect = 2e-14 Identities = 238/359 (66%), Gaps = 2/359 (1%) Strand=Plus/Minus Query 175839 AACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGA 175898 |||| || || ||||| |||| ||||||||| | ||||| || | |||| || || Sbjct 13261 AACCAGTGCCAATACCTTCTGCACCGTTCACCAACACCATCGGTATAATTGGTATATACC 13202 Query 175899 AGTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCG 175958 | | |||||||||| | | ||||||||| || || || | |||||||| || Sbjct 13201 AATTTGGCTCAATGCGCTGGCCATCGTCAACCTGGTATGACAGCAAAGGATCATCCAACG 13142 Query 175959 GATCAAAGATCTTTCGGGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGACG 176018 | | ||| || || | | | | | || || ||||| | | | || Sbjct 13141 GGTGAAAAATAAGACGTGTAAGCGGCGACATCAAAGTGAAAATATAACGAGCACTGG-CG 13083 Query 176019 CA-TCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATA 176077 || || ||||| || | || || |||||||||||||| | ||||||||| | ||| || Sbjct 13082 CAATCTTTACCGCCAACAAGTCGGGTACCAAACTGACCGCGCGGCTCAAGCAAATTAATG 13023 Query 176078 TTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCA 176137 || || ||||| | ||| | ||||| || ||||| || ||| ||||||||| Sbjct 13022 TTATTCGAACCGACAAAGTTTTGTGCCAAATTAACAATAGTCATTTGGAGTGAGACTTCA 12963 Query 176138 CCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTC 176196 ||||| || || || | ||||||| || | | | ||| || |||||||| | ||| Sbjct 12962 CCGTGATGATATGCTGACATCTCTGCCACTGAACCGGACAATTGTGCCACTTTGACCTC 12904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620591303540560