Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_015265.1 Length=37236 Score E Sequences producing significant alignments: (Bits) Value seq1559 89.7 1e-13 seq12005 82.4 2e-11 >seq1559 Length=191813 Score = 89.7 bits (98), Expect = 1e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 9477 GAAGGCACGCTGGTGGATGCGACGATCTTCGAGGCTGCGCCGTCCACGAAGAACGCCGGG 9536 || ||||| ||| | ||||| || ||| ||| || || | || | ||| ||| | Sbjct 32676 GAGGGCACACTGATTGATGCCACCATCATCGCAGCGCCGTCTTCTAGGAAAAACAAAGAA 32617 Query 9537 AAGAGCCGTGACCCGGAGATGCATCAGACGAAGAAGGGCAACGACTGGTATTTCGGCATG 9596 | | |||||||| ||||||| |||| |||||||||||||| ||||| || |||||| Sbjct 32616 CATACGCGTGACCCAGAGATGCGCCAGAGCAAGAAGGGCAACGAATGGTACTTTGGCATG 32557 Query 9597 AAGGCCCATGTCGGCGTCGACGCCGACTC 9625 ||||| ||| || ||| | | ||||||| Sbjct 32556 AAGGCGCATATCAGCGCCAATACCGACTC 32528 >seq12005 Length=72809 Score = 82.4 bits (90), Expect = 2e-11 Identities = 92/121 (76%), Gaps = 4/121 (3%) Strand=Plus/Minus Query 9545 TGACCCGGAGATGCATCAGA-CGAAGAAGGGCAACGACTGGTATTTCGGCATGAAGGCCC 9603 ||| || | |||||| |||| |||||| ||||||| | || || ||||||||||| | Sbjct 72293 TGATCCCGCGATGCAGCAGAGCGAAGA---GCAACGAATAATACTTTGGCATGAAGGCGC 72237 Query 9604 ATGTCGGCGTCGACGCCGACTCGGGTCTGGTGCATAGCGTGGTCACCACGGCGGCCAACG 9663 || |||||| ||| | ||||| ||||||||||| | | | |||||| |||| ||| | Sbjct 72236 ATATCGGCGCCGATACTGACTCTGGTCTGGTGCACAACTTACGCACCACAGCGGTCAAAG 72177 Query 9664 A 9664 | Sbjct 72176 A 72176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119006074447148