Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq489 158 3e-33
seq17788 141 2e-28
>seq489
Length=77466
Score = 158 bits (174), Expect = 3e-33
Identities = 158/205 (77%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| || || ||||| |||||||| ||||| |||| ||| || | |||||||| || |||
Sbjct 4418 TGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCATCTTCCAGTTGC 4477
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || || ||||| || || ||||||||||| |||||||| |||||||| || || ||
Sbjct 4478 TTGCCGGCAAAGATCAGACGCTGTTGGTCTGGGGGAATGCCCTCTTTGTCCTGGATCTTA 4537
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
|||||| ||||| |||||||| ||| || || || | ||||| ||||| || ||
Sbjct 4538 GCCTTGACATTCTCGATGGTGTCAGAAGGCTCAACCTCCAAGGTAATGGTCTTACCGGTG 4597
Query 195118 AAAGTTTTTACGAACACTTGCATTT 195142
| |||||| ||||| | |||||||
Sbjct 4598 AGAGTTTTGACGAATATCTGCATTT 4622
>seq17788
Length=7208
Score = 141 bits (156), Expect = 2e-28
Identities = 159/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987
|||||| | || | ||| || ||||| || ||||| ||||| | || |||| |||||
Sbjct 2410 CAAAACCAAATGCAAAGTCGATTCTTTCTGGATATTATAATCAGAGAGTGTTCGACCATC 2351
Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047
||| | ||| || || || ||||| || |||||||| ||||||||||| |||||||||||
Sbjct 2350 TTCCAACTGTTTGCCAGCAAAGATTAGACGTTGTTGATCTGGAGGAATTCCTTCTTTGTC 2291
Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107
||||| || ||||| || || || ||||||||| ||| || ||||| || | ||
Sbjct 2290 CTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGAAGGTTCGACCTCAAGAGTGATGGT 2231
Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||| || || | ||||| || || | |||||
Sbjct 2230 CTTACCCGTGAGGGTTTTAACAAAAATCTGCAT 2198
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109204786767791
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |