Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1169 616 2e-171 seq4404 230 3e-55 >seq1169 Length=8375 Score = 616 bits (682), Expect = 2e-171 Identities = 1263/1884 (67%), Gaps = 17/1884 (1%) Strand=Plus/Plus Query 46966 ATTTGTCTTTT-TCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAA 47024 ||| | ||||| || |||||||| | || | ||| || | ||||| ||||||||| Sbjct 813 ATTCGACTTTTGTCTACAGTAAATTGTATAGCATTTGCTGCCGGCTTTGTGCGTAAATAA 872 Query 47025 TACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAA 47084 ||||| ||||| || | |||| ||||| ||| || || || ||| |||||| | Sbjct 873 TACATTCCAGTTTTAAGACCTGCTTTCCATGAATAAAAGTGTATTGAAGTCAATTTACCA 932 Query 47085 TAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTA 47144 ||| | ||||| | | ||| ||||| | || || || || ||||| || || |||||| Sbjct 933 TAATTTGGTTCGGCGACATGTATATTGAATGACTGGCTTTGGTCAATGAAAGCTCCTCTA 992 Query 47145 TCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGT 47204 || || ||||| | || | || | |||||||| || |||||||| | | | Sbjct 993 TCTGCAGCCATTTTTATTGTTGATTTTACAGAAATCTCCCAGACAGTTTTATATAAGTCT 1052 Query 47205 TTAATGTCTTCTGGGA--GATT-AGTATTTTGAATAGATCCTCCgttttctataattttg 47261 | | |||| || | | || | ||| ||||||||| || | || | || || Sbjct 1053 CTGACATCTTTAGGAATTGTTTCAATATGTTGAATAGAACCACGACTTGACACTATATTA 1112 Query 47262 ttttttaattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTA 47321 ||||| | |||| ||| | | ||||||||| ||| | || | | ||| Sbjct 1113 TTTTTCATATCATCATCCCACAAATCCAATTCAGTTAAATCACGTAATAAATAATGGTTA 1172 Query 47322 ACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCT 47381 |||| |||||| |||||||||| || || | | | |||||||| || || ||||| Sbjct 1173 ACAACTTGAAACTCTCCAGATAAAACCCTTCTGGTGTATATATTTGAAGTGTAGGGTTCA 1232 Query 47382 ATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAAT 47441 | |||||||||||||| | |||||||| || || ||||||||||| | ||| || | Sbjct 1233 AATGATTCATTATTTCCCATGATTTGAGCTGTAGAAGCTGTAGGCATTGGTGCTACAAGG 1292 Query 47442 AAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGA 47501 | | ||||||||||||||| ||||| |||| ||| ||||||||| | | Sbjct 1293 AGGGAATTTCTTACTCCATACTTTTGAATCTTAAGCTTTAATTGTTGCCAATCCCACAAA 1352 Query 47502 TCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCA 47561 | | ||| ||| | |||||||| || |||||||| ||||| || || Sbjct 1353 TTCGTTGGTTTTTTTCCCCACATGTCATATTGTAGGATTCCTTTGCTTATAGGGCTTCCC 1412 Query 47562 TTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTA 47621 | ||| || | ||| ||||| || || ||| ||||||||||||||||| || | ||| Sbjct 1413 TCATACGTCTCATAGGGACCATACTTTTCAGCCAGTTCACAACTTGCTTCTAAGGAACTG 1472 Query 47622 TAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGA 47681 |||||||| |||||||| |||| | |||| | |||||| |||| | ||| Sbjct 1473 TAATATATCGTTTCAAAAATTTGTTGATTTAAAAGAAAGGCTTCTTCGCTTTCATAGGGA 1532 Query 47682 TANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGA 47741 || | | ||| || || || ||||| ||||| ||||| || | ||| Sbjct 1533 TAACGCATTAAAATTAGAGCATCAGCAAAGCCCTGAACGCCAATGCCAATAGGACGATGT 1592 Query 47742 GTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTT 47801 | ||||| ||| ||| | || ||||| | || || || || ||||||||| Sbjct 1593 CTCAAGTTAGACTTTCGAGCCTCTTGCAAAGGATAATAATTGATGTCAATTATTTTATTT 1652 Query 47802 AGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATTT 47861 ||| | ||| |||| || | |||||| | || || || Sbjct 1653 AGATTTCGTGTTACTATTTTCGTTACTTCCTTTAACTTTTCGAAATCATATTTTTT-TTC 1711 Query 47862 ATA----ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGG 47917 | |||||| |||| | || || ||||| | ||| ||||| || | |||| ||| Sbjct 1712 CGAGGACACAAACATATTTAAGGCAATCGATGCCAAATTGCATACCGCAATTTCATCTGG 1771 Query 47918 ATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTG 47977 || ||||| || ||||| | |||| ||||| ||||| || || || | |||||| Sbjct 1772 TGCAGAATATTCTACAATTTCTGTGCATAAATTACTGCATTTAATGGTGCCAACATTTTG 1831 Query 47978 ATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTAT 48037 || || | | ||||||| || || | | |||| | || || |||||||||| Sbjct 1832 TTGGTTGCTTTTTCTATTACATGAATCTTTAAACAACATATATGGAGTGCCAGTTTCTAC 1891 Query 48038 CTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATT 48097 |||| |||||| ||||| ||||| || || || || || || | Sbjct 1892 TTGAGCTTCAATTATAGAAAACCAAAGAGATTGTGCTTTAATTTTTCTACTTGCGCGACC 1951 Query 48098 ATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCC 48157 || ||||| ||||| ||||||||| ||||| || || || | |||| || | || Sbjct 1952 TTCTTGTTCATATTTTTCATATAACTTTTCAAACTCGTCACCCCAAACATCATGAAGGCC 2011 Query 48158 AGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAA 48217 ||| |||| || ||||||||| | |||||| || ||| | | ||||| ||||||| Sbjct 2012 AGGGCATTTATGAGGACACATAAGTGACCACTCTCGATCTTCCTCTACTCGTTTCATAAA 2071 Query 48218 TATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACT 48277 | ||||| ||||||||||| ||||||||| | || ||| ||||||| || ||| | Sbjct 2072 AAGGTCTGGAATCCAAAGAGCGTAAAATAAATCACGAGCTCTGTGTTCTTCCTTTCCAGT 2131 Query 48278 ATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGC 48337 ||| |||| || || | || || | || || |||||||| || |||||||| || || Sbjct 2132 ATTTTTTTTTAGATCCAAGAACTCGAAAATGTCTGCATGCCAAGGCTCTAAATAAATAGC 2191 Query 48338 CATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAAC 48397 | | | || || | ||| |||||||||||||| ||||| || ||| ||| |||| Sbjct 2192 AAATGCTCCAGGCCTCTTACCACCTCCTTGATCTACATATCGTGCGACATTATTAAAAAC 2251 Query 48398 TCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACT 48457 ||| | |||||| |||| ||||| ||| ||||||| ||||||||||| || | || | Sbjct 2252 TCTAAGCATTGGCACAAGTCCATTCGATGTACCATTAGTTCCCGAAATTGAAGTACCCTT 2311 Query 48458 AGCTCTTAT---ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGC 48514 ||| | || || | | || |||||||| ||||| || ||| ||||| | || Sbjct 2312 AGCACGAATGCAATGAACATTT---ATACCTATTCCACCGGCAGATTTTGATATCATCGC 2368 Query 48515 ACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAA 48574 ||| ||| | | | | |||| ||||||||| ||| ||| ||| |||| ||||| Sbjct 2369 ACATTGTTCTACAGATTTAAAAATGCCTTCTATAGAATCCGCTACCATTGTTAAAAGAAA 2428 Query 48575 ACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAAT 48634 ||| ||| | ||||||| || ||| | | | ||| || || || |||||||| | Sbjct 2429 ACATGAAGATAGTTGCGGACGATTGGTTGCAGCAGCAAACAAAGTAGGTGATGCATGCGT 2488 Query 48635 AAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCC-CATTGAT 48693 || | || || | | ||||| ||||| || | | ||| |||||| || | | Sbjct 2489 GAAGTAACGTTCCGAAAGTAGATTATAAGTTTCTATTGCTGCATCAATATCCTCACCG-T 2547 Query 48694 GTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTA 48753 ||||||| || | |||||||||||||| | ||||||||| ||| | || || |||| Sbjct 2548 GTATACCAATCGCAACACGCATTAACATGTGTTGAGGTCTCTCAGCGATCTTTCCGTTTA 2607 Query 48754 TTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGT 48813 |||| || | ||| ||| |||||| |||||||| ||||||||||| || ||| || Sbjct 2608 TTTTTAATAAATACGATCGTTCCAAAGTTTTAAATCCAAAATAGTTATAACCAAAATCAC 2667 Query 48814 TATCATTAATAATTGATGAATTTA 48837 || | |||||||| ||||||| Sbjct 2668 GGTCGTAAATAATTGCGGAATTTA 2691 >seq4404 Length=3800 Score = 230 bits (254), Expect = 3e-55 Identities = 416/602 (69%), Gaps = 10/602 (2%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCA---TTAGAATTCATTACTCCCAT 18668 |||||| ||| ||||||||| |||| || ||| | ||||| |||||| ||||| Sbjct 3086 TTAAAAGTCAGCATCCAAAGTAAAAACGTTGTCTAGACGGTTAGA---CATTACACCCAT 3030 Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 |||||||||| | ||| |||| || || || || || || || || | || || | Sbjct 3029 GCGTTGATATTCGCCTACTTTTTTCTCGAAAAAGTTCGTCTTGCCGTCCAGCGAAATCAA 2970 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 |||||| || |||||||| ||| || || ||||| | || | ||| | ||| Sbjct 2969 TTCCATGAATGTGAATGGATTCTTTGTGTTGTAGATTTTGCCCACGCCGAGTTCAACTAG 2910 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 ||| | ||| || ||||| | ||||||| ||||| | ||||||||| || || | Sbjct 2909 TAGGCGATCAGCGACAAACTCAATATATTCCGACATCAGTTTACAATTCATGCCAATCAG 2850 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 ||||| || | |||||| || | ||||| || ||||| || |||||||| || || || Sbjct 2849 GTTAACCGGCAATGCATCGGTCAAGAATTCCTGCTCTATTTTGACTGCCTCCGAAATGAT 2790 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCA-AACATGCAA 18967 | || | |||| | ||| | | | | ||| | ||||| | |||| |||| Sbjct 2789 TTCAATAATACGCTCTTTGGTTGGACGCTGCACCAAATGATGGAACATAAGAACA-GCAA 2731 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | ||||| |||| || || || | || |||||||| || |||||||||||||||| Sbjct 2730 AGTCACAGTGTAAACCTTCATCACGCGAAATTAATTCATTGGAGAATGTTAAACCAGGCA 2671 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 | || || | ||| || | ||| || || || ||||| ||| ||||||||| || | Sbjct 2670 TAAGGCCACGTTTCTTCAGCCAAAAGATGGACGCAAAACTGCCACTAAAGAATATGCCCT 2611 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG-AATCCAT 19146 | || || ||||| |||| | ||| || || || |||| | ||| ||| |||||| Sbjct 2610 CGACCGCAGCAAAGGCAATAATTCTCTCACCGAAATTAGC-TGATTTCGATGAAATCCAA 2552 Query 19147 TTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGA 19206 || |||||||||||||| ||| ||| ||||| ||||| || | ||| || ||| Sbjct 2551 GAGAGCGCCCAATCAGCCTTGCGTTTAACAGCGGGCATGGTCTCAATTGCATTGAAAAGA 2492 Query 19207 TA 19208 || Sbjct 2491 TA 2490 Score = 93.3 bits (102), Expect = 5e-14 Identities = 185/274 (68%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 |||| | | ||| | || || || | || |||||||| || || | |||||| || || Sbjct 2406 ATCTCTTATATAGGTGTCGATTAAAACGCTATACATTTCGGAGTGCACATTTTCCATGGC 2347 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTC 19343 || || || || || || || | ||| || || | || ||||| | || | || Sbjct 2346 AATTTGGAAGCCATAGAAGCAACGTGCCTCAGTCACTTGAACTTCTTGGCTGAAACGCTC 2287 Query 19344 GACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAAT 19403 ||||||||||||||| || || ||||| ||| ||||| || || || || || || Sbjct 2286 GACCAAATTTTCATTCACAATGCCATCGGAAGCAGCAAAGAAAGCCAACACGTGCGATAT 2227 Query 19404 AAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTAC 19463 ||||| || | || | || |||||| | | || || || | |||||| Sbjct 2226 GAAATGACGCTCGTTATCAGTAAGCTTAGCCCAATCTGTCAAGTCCTTCGACAGATCTAC 2167 Query 19464 TTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTT 19497 ||| ||||||||||| || || |||||||| ||| Sbjct 2166 TTCCTCAACTGTCCAGAATGATGCCTCTGCCTTT 2133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561971975691720