Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq1169 616 2e-171
seq4404 230 3e-55
>seq1169
Length=8375
Score = 616 bits (682), Expect = 2e-171
Identities = 1263/1884 (67%), Gaps = 17/1884 (1%)
Strand=Plus/Plus
Query 46966 ATTTGTCTTTT-TCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAA 47024
||| | ||||| || |||||||| | || | ||| || | ||||| |||||||||
Sbjct 813 ATTCGACTTTTGTCTACAGTAAATTGTATAGCATTTGCTGCCGGCTTTGTGCGTAAATAA 872
Query 47025 TACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAA 47084
||||| ||||| || | |||| ||||| ||| || || || ||| |||||| |
Sbjct 873 TACATTCCAGTTTTAAGACCTGCTTTCCATGAATAAAAGTGTATTGAAGTCAATTTACCA 932
Query 47085 TAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTA 47144
||| | ||||| | | ||| ||||| | || || || || ||||| || || ||||||
Sbjct 933 TAATTTGGTTCGGCGACATGTATATTGAATGACTGGCTTTGGTCAATGAAAGCTCCTCTA 992
Query 47145 TCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGT 47204
|| || ||||| | || | || | |||||||| || |||||||| | | |
Sbjct 993 TCTGCAGCCATTTTTATTGTTGATTTTACAGAAATCTCCCAGACAGTTTTATATAAGTCT 1052
Query 47205 TTAATGTCTTCTGGGA--GATT-AGTATTTTGAATAGATCCTCCgttttctataattttg 47261
| | |||| || | | || | ||| ||||||||| || | || | || ||
Sbjct 1053 CTGACATCTTTAGGAATTGTTTCAATATGTTGAATAGAACCACGACTTGACACTATATTA 1112
Query 47262 ttttttaattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTA 47321
||||| | |||| ||| | | ||||||||| ||| | || | | |||
Sbjct 1113 TTTTTCATATCATCATCCCACAAATCCAATTCAGTTAAATCACGTAATAAATAATGGTTA 1172
Query 47322 ACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCT 47381
|||| |||||| |||||||||| || || | | | |||||||| || || |||||
Sbjct 1173 ACAACTTGAAACTCTCCAGATAAAACCCTTCTGGTGTATATATTTGAAGTGTAGGGTTCA 1232
Query 47382 ATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAAT 47441
| |||||||||||||| | |||||||| || || ||||||||||| | ||| || |
Sbjct 1233 AATGATTCATTATTTCCCATGATTTGAGCTGTAGAAGCTGTAGGCATTGGTGCTACAAGG 1292
Query 47442 AAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGA 47501
| | ||||||||||||||| ||||| |||| ||| ||||||||| | |
Sbjct 1293 AGGGAATTTCTTACTCCATACTTTTGAATCTTAAGCTTTAATTGTTGCCAATCCCACAAA 1352
Query 47502 TCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCA 47561
| | ||| ||| | |||||||| || |||||||| ||||| || ||
Sbjct 1353 TTCGTTGGTTTTTTTCCCCACATGTCATATTGTAGGATTCCTTTGCTTATAGGGCTTCCC 1412
Query 47562 TTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTA 47621
| ||| || | ||| ||||| || || ||| ||||||||||||||||| || | |||
Sbjct 1413 TCATACGTCTCATAGGGACCATACTTTTCAGCCAGTTCACAACTTGCTTCTAAGGAACTG 1472
Query 47622 TAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGA 47681
|||||||| |||||||| |||| | |||| | |||||| |||| | |||
Sbjct 1473 TAATATATCGTTTCAAAAATTTGTTGATTTAAAAGAAAGGCTTCTTCGCTTTCATAGGGA 1532
Query 47682 TANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGA 47741
|| | | ||| || || || ||||| ||||| ||||| || | |||
Sbjct 1533 TAACGCATTAAAATTAGAGCATCAGCAAAGCCCTGAACGCCAATGCCAATAGGACGATGT 1592
Query 47742 GTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTT 47801
| ||||| ||| ||| | || ||||| | || || || || |||||||||
Sbjct 1593 CTCAAGTTAGACTTTCGAGCCTCTTGCAAAGGATAATAATTGATGTCAATTATTTTATTT 1652
Query 47802 AGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATTT 47861
||| | ||| |||| || | |||||| | || || ||
Sbjct 1653 AGATTTCGTGTTACTATTTTCGTTACTTCCTTTAACTTTTCGAAATCATATTTTTT-TTC 1711
Query 47862 ATA----ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGG 47917
| |||||| |||| | || || ||||| | ||| ||||| || | |||| |||
Sbjct 1712 CGAGGACACAAACATATTTAAGGCAATCGATGCCAAATTGCATACCGCAATTTCATCTGG 1771
Query 47918 ATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTG 47977
|| ||||| || ||||| | |||| ||||| ||||| || || || | ||||||
Sbjct 1772 TGCAGAATATTCTACAATTTCTGTGCATAAATTACTGCATTTAATGGTGCCAACATTTTG 1831
Query 47978 ATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTAT 48037
|| || | | ||||||| || || | | |||| | || || ||||||||||
Sbjct 1832 TTGGTTGCTTTTTCTATTACATGAATCTTTAAACAACATATATGGAGTGCCAGTTTCTAC 1891
Query 48038 CTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATT 48097
|||| |||||| ||||| ||||| || || || || || || |
Sbjct 1892 TTGAGCTTCAATTATAGAAAACCAAAGAGATTGTGCTTTAATTTTTCTACTTGCGCGACC 1951
Query 48098 ATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCC 48157
|| ||||| ||||| ||||||||| ||||| || || || | |||| || | ||
Sbjct 1952 TTCTTGTTCATATTTTTCATATAACTTTTCAAACTCGTCACCCCAAACATCATGAAGGCC 2011
Query 48158 AGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAA 48217
||| |||| || ||||||||| | |||||| || ||| | | ||||| |||||||
Sbjct 2012 AGGGCATTTATGAGGACACATAAGTGACCACTCTCGATCTTCCTCTACTCGTTTCATAAA 2071
Query 48218 TATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACT 48277
| ||||| ||||||||||| ||||||||| | || ||| ||||||| || ||| |
Sbjct 2072 AAGGTCTGGAATCCAAAGAGCGTAAAATAAATCACGAGCTCTGTGTTCTTCCTTTCCAGT 2131
Query 48278 ATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGC 48337
||| |||| || || | || || | || || |||||||| || |||||||| || ||
Sbjct 2132 ATTTTTTTTTAGATCCAAGAACTCGAAAATGTCTGCATGCCAAGGCTCTAAATAAATAGC 2191
Query 48338 CATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAAC 48397
| | | || || | ||| |||||||||||||| ||||| || ||| ||| ||||
Sbjct 2192 AAATGCTCCAGGCCTCTTACCACCTCCTTGATCTACATATCGTGCGACATTATTAAAAAC 2251
Query 48398 TCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACT 48457
||| | |||||| |||| ||||| ||| ||||||| ||||||||||| || | || |
Sbjct 2252 TCTAAGCATTGGCACAAGTCCATTCGATGTACCATTAGTTCCCGAAATTGAAGTACCCTT 2311
Query 48458 AGCTCTTAT---ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGC 48514
||| | || || | | || |||||||| ||||| || ||| ||||| | ||
Sbjct 2312 AGCACGAATGCAATGAACATTT---ATACCTATTCCACCGGCAGATTTTGATATCATCGC 2368
Query 48515 ACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAA 48574
||| ||| | | | | |||| ||||||||| ||| ||| ||| |||| |||||
Sbjct 2369 ACATTGTTCTACAGATTTAAAAATGCCTTCTATAGAATCCGCTACCATTGTTAAAAGAAA 2428
Query 48575 ACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAAT 48634
||| ||| | ||||||| || ||| | | | ||| || || || |||||||| |
Sbjct 2429 ACATGAAGATAGTTGCGGACGATTGGTTGCAGCAGCAAACAAAGTAGGTGATGCATGCGT 2488
Query 48635 AAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCC-CATTGAT 48693
|| | || || | | ||||| ||||| || | | ||| |||||| || | |
Sbjct 2489 GAAGTAACGTTCCGAAAGTAGATTATAAGTTTCTATTGCTGCATCAATATCCTCACCG-T 2547
Query 48694 GTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTA 48753
||||||| || | |||||||||||||| | ||||||||| ||| | || || ||||
Sbjct 2548 GTATACCAATCGCAACACGCATTAACATGTGTTGAGGTCTCTCAGCGATCTTTCCGTTTA 2607
Query 48754 TTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGT 48813
|||| || | ||| ||| |||||| |||||||| ||||||||||| || ||| ||
Sbjct 2608 TTTTTAATAAATACGATCGTTCCAAAGTTTTAAATCCAAAATAGTTATAACCAAAATCAC 2667
Query 48814 TATCATTAATAATTGATGAATTTA 48837
|| | |||||||| |||||||
Sbjct 2668 GGTCGTAAATAATTGCGGAATTTA 2691
>seq4404
Length=3800
Score = 230 bits (254), Expect = 3e-55
Identities = 416/602 (69%), Gaps = 10/602 (2%)
Strand=Plus/Minus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCA---TTAGAATTCATTACTCCCAT 18668
|||||| ||| ||||||||| |||| || ||| | ||||| |||||| |||||
Sbjct 3086 TTAAAAGTCAGCATCCAAAGTAAAAACGTTGTCTAGACGGTTAGA---CATTACACCCAT 3030
Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728
|||||||||| | ||| |||| || || || || || || || || | || || |
Sbjct 3029 GCGTTGATATTCGCCTACTTTTTTCTCGAAAAAGTTCGTCTTGCCGTCCAGCGAAATCAA 2970
Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788
|||||| || |||||||| ||| || || ||||| | || | ||| | |||
Sbjct 2969 TTCCATGAATGTGAATGGATTCTTTGTGTTGTAGATTTTGCCCACGCCGAGTTCAACTAG 2910
Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848
||| | ||| || ||||| | ||||||| ||||| | ||||||||| || || |
Sbjct 2909 TAGGCGATCAGCGACAAACTCAATATATTCCGACATCAGTTTACAATTCATGCCAATCAG 2850
Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908
||||| || | |||||| || | ||||| || ||||| || |||||||| || || ||
Sbjct 2849 GTTAACCGGCAATGCATCGGTCAAGAATTCCTGCTCTATTTTGACTGCCTCCGAAATGAT 2790
Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCA-AACATGCAA 18967
| || | |||| | ||| | | | | ||| | ||||| | |||| ||||
Sbjct 2789 TTCAATAATACGCTCTTTGGTTGGACGCTGCACCAAATGATGGAACATAAGAACA-GCAA 2731
Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027
| ||||| |||| || || || | || |||||||| || ||||||||||||||||
Sbjct 2730 AGTCACAGTGTAAACCTTCATCACGCGAAATTAATTCATTGGAGAATGTTAAACCAGGCA 2671
Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087
| || || | ||| || | ||| || || || ||||| ||| ||||||||| || |
Sbjct 2670 TAAGGCCACGTTTCTTCAGCCAAAAGATGGACGCAAAACTGCCACTAAAGAATATGCCCT 2611
Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG-AATCCAT 19146
| || || ||||| |||| | ||| || || || |||| | ||| ||| ||||||
Sbjct 2610 CGACCGCAGCAAAGGCAATAATTCTCTCACCGAAATTAGC-TGATTTCGATGAAATCCAA 2552
Query 19147 TTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGA 19206
|| |||||||||||||| ||| ||| ||||| ||||| || | ||| || |||
Sbjct 2551 GAGAGCGCCCAATCAGCCTTGCGTTTAACAGCGGGCATGGTCTCAATTGCATTGAAAAGA 2492
Query 19207 TA 19208
||
Sbjct 2491 TA 2490
Score = 93.3 bits (102), Expect = 5e-14
Identities = 185/274 (68%), Gaps = 0/274 (0%)
Strand=Plus/Minus
Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283
|||| | | ||| | || || || | || |||||||| || || | |||||| || ||
Sbjct 2406 ATCTCTTATATAGGTGTCGATTAAAACGCTATACATTTCGGAGTGCACATTTTCCATGGC 2347
Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTC 19343
|| || || || || || || | ||| || || | || ||||| | || | ||
Sbjct 2346 AATTTGGAAGCCATAGAAGCAACGTGCCTCAGTCACTTGAACTTCTTGGCTGAAACGCTC 2287
Query 19344 GACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAAT 19403
||||||||||||||| || || ||||| ||| ||||| || || || || || ||
Sbjct 2286 GACCAAATTTTCATTCACAATGCCATCGGAAGCAGCAAAGAAAGCCAACACGTGCGATAT 2227
Query 19404 AAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTAC 19463
||||| || | || | || |||||| | | || || || | ||||||
Sbjct 2226 GAAATGACGCTCGTTATCAGTAAGCTTAGCCCAATCTGTCAAGTCCTTCGACAGATCTAC 2167
Query 19464 TTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTT 19497
||| ||||||||||| || || |||||||| |||
Sbjct 2166 TTCCTCAACTGTCCAGAATGATGCCTCTGCCTTT 2133
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561971975691720
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