Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq4404 118 1e-21
>seq4404
Length=3800
Score = 118 bits (130), Expect = 1e-21
Identities = 301/450 (67%), Gaps = 6/450 (1%)
Strand=Plus/Minus
Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931
||| || ||||| ||||||||| || ||| | | |||||||| || ||||| || ||
Sbjct 3041 CATTACACCCATGCGTTGATATTCGCCTACTTTTTTCTCGAAAAAGTTCGTCTTGCCGTC 2982
Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGA 36991
|| || || |||||| || |||||||| ||| || || || | | || |
Sbjct 2981 CAGCGAAATCAATTCCATGAATGTGAATGGATTCTTTGTGTTGTAGATTTTGCC-CACGC 2923
Query 36992 TAATTCCTTC-AGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGT 37050
| | | | || || | ||| || ||||| || || |||| |||| |||| | | |
Sbjct 2922 CGAGTTCAACTAGTAGGCGATCAGCGACAAACTCAATATATTCCGACATCAGTTTACAAT 2863
Query 37051 TTATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTACA 37109
| || ||||| || || || || | |||||| | ||||| | | | ||||| | ||
Sbjct 2862 TCATGCCAATCAGGTTAACCGGCAATGCATCGGTCAAGAATTCCTGCT-CTATTTTGACT 2804
Query 37110 GCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAAC 37169
|| || || || | || |||| |||| ||||| | | |||| | |||
Sbjct 2803 GCCTCCGAAATGATTTCAATAATACGCTCTTTGGTTGGACGCTGCACCAAATGATGGAAC 2744
Query 37170 AATA-AACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAA 37228
| | |||| ||||| ||||| |||||||||||||| | || |||||||| || ||
Sbjct 2743 ATAAGAACA-GCAAAGTCACAGTGTAAACCTTCATCACGCGAAATTAATTCATTGGAGAA 2685
Query 37229 GGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGA 37288
||||| || ||||| | || | ||| || | |||||| || | |||||| |||
Sbjct 2684 TGTTAAACCAGGCATAAGGCCACGTTTCTTCAGCCAAAAGATGGACGCAAAACTGCCACT 2625
Query 37289 AAAGAAAATACCTTCAACTGCTGCAAATGC 37318
|||||| || || || || || ||||| ||
Sbjct 2624 AAAGAATATGCCCTCGACCGCAGCAAAGGC 2595
Score = 91.5 bits (100), Expect = 2e-13
Identities = 175/258 (68%), Gaps = 0/258 (0%)
Strand=Plus/Minus
Query 37439 ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGC 37498
|||| ||||||| || || |||| | ||||||||||| ||||| | |||||| || ||
Sbjct 2406 ATCTCTTATATAGGTGTCGATTAAAACGCTATACATTTCGGAGTGCACATTTTCCATGGC 2347
Query 37499 TATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTT 37558
|| || || ||||| || || | || |||| | |||||| || | || | ||
Sbjct 2346 AATTTGGAAGCCATAGAAGCAACGTGCCTCAGTCACTTGAACTTCTTGGCTGAAACGCTC 2287
Query 37559 AGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTAT 37618
| || |||||||| || || ||||| ||| ||||||||||| | || | |||
Sbjct 2286 GACCAAATTTTCATTCACAATGCCATCGGAAGCAGCAAAGAAAGCCAACACGTGCGATAT 2227
Query 37619 AAAATGTCTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAAC 37678
||||| | || | || | | || |||||| | | || || || | ||| ||
Sbjct 2226 GAAATGACGCTCGTTATCAGTAAGCTTAGCCCAATCTGTCAAGTCCTTCGACAGATCTAC 2167
Query 37679 TTCATCAACGGTCCAAAA 37696
||| ||||| ||||| ||
Sbjct 2166 TTCCTCAACTGTCCAGAA 2149
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592172622686920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |