Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq4404 118 1e-21 >seq4404 Length=3800 Score = 118 bits (130), Expect = 1e-21 Identities = 301/450 (67%), Gaps = 6/450 (1%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| || ||||| ||||||||| || ||| | | |||||||| || ||||| || || Sbjct 3041 CATTACACCCATGCGTTGATATTCGCCTACTTTTTTCTCGAAAAAGTTCGTCTTGCCGTC 2982 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGA 36991 || || || |||||| || |||||||| ||| || || || | | || | Sbjct 2981 CAGCGAAATCAATTCCATGAATGTGAATGGATTCTTTGTGTTGTAGATTTTGCC-CACGC 2923 Query 36992 TAATTCCTTC-AGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGT 37050 | | | | || || | ||| || ||||| || || |||| |||| |||| | | | Sbjct 2922 CGAGTTCAACTAGTAGGCGATCAGCGACAAACTCAATATATTCCGACATCAGTTTACAAT 2863 Query 37051 TTATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTACA 37109 | || ||||| || || || || | |||||| | ||||| | | | ||||| | || Sbjct 2862 TCATGCCAATCAGGTTAACCGGCAATGCATCGGTCAAGAATTCCTGCT-CTATTTTGACT 2804 Query 37110 GCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAAC 37169 || || || || | || |||| |||| ||||| | | |||| | ||| Sbjct 2803 GCCTCCGAAATGATTTCAATAATACGCTCTTTGGTTGGACGCTGCACCAAATGATGGAAC 2744 Query 37170 AATA-AACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAA 37228 | | |||| ||||| ||||| |||||||||||||| | || |||||||| || || Sbjct 2743 ATAAGAACA-GCAAAGTCACAGTGTAAACCTTCATCACGCGAAATTAATTCATTGGAGAA 2685 Query 37229 GGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGA 37288 ||||| || ||||| | || | ||| || | |||||| || | |||||| ||| Sbjct 2684 TGTTAAACCAGGCATAAGGCCACGTTTCTTCAGCCAAAAGATGGACGCAAAACTGCCACT 2625 Query 37289 AAAGAAAATACCTTCAACTGCTGCAAATGC 37318 |||||| || || || || || ||||| || Sbjct 2624 AAAGAATATGCCCTCGACCGCAGCAAAGGC 2595 Score = 91.5 bits (100), Expect = 2e-13 Identities = 175/258 (68%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 37439 ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGC 37498 |||| ||||||| || || |||| | ||||||||||| ||||| | |||||| || || Sbjct 2406 ATCTCTTATATAGGTGTCGATTAAAACGCTATACATTTCGGAGTGCACATTTTCCATGGC 2347 Query 37499 TATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTT 37558 || || || ||||| || || | || |||| | |||||| || | || | || Sbjct 2346 AATTTGGAAGCCATAGAAGCAACGTGCCTCAGTCACTTGAACTTCTTGGCTGAAACGCTC 2287 Query 37559 AGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTAT 37618 | || |||||||| || || ||||| ||| ||||||||||| | || | ||| Sbjct 2286 GACCAAATTTTCATTCACAATGCCATCGGAAGCAGCAAAGAAAGCCAACACGTGCGATAT 2227 Query 37619 AAAATGTCTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAAC 37678 ||||| | || | || | | || |||||| | | || || || | ||| || Sbjct 2226 GAAATGACGCTCGTTATCAGTAAGCTTAGCCCAATCTGTCAAGTCCTTCGACAGATCTAC 2167 Query 37679 TTCATCAACGGTCCAAAA 37696 ||| ||||| ||||| || Sbjct 2166 TTCCTCAACTGTCCAGAA 2149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592172622686920