Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_017972.1 Length=280538 Score E Sequences producing significant alignments: (Bits) Value seq8176 145 1e-29 >seq8176 Length=26989 Score = 145 bits (160), Expect = 1e-29 Identities = 260/378 (69%), Gaps = 14/378 (4%) Strand=Plus/Plus Query 22977 TTCATCAGATTCAAAGAACAGAATTTGTGCGCAACCTTCGCCAGCGTAGATCAGTGCCGG 23036 ||| ||| |||||| || | | ||||||||||||||||||||| || || ||| || Sbjct 9148 TTCGTCACCTTCAAAAAATAACACTTGTGCGCAACCTTCGCCAGCATAAATTTTTGCAGG 9207 Query 23037 GCTTGGTGTGGTATTGGAAAACTCCAGAGTAAGCGAGCCTTTCCATTCTGGTTCCAGCGG 23096 || || |||||||| || || || || | |||||| |||||||||||| | || Sbjct 9208 TAACGGCGTTGTATTGGAGAATTCTAGCGTTACATAGCCTTGCCATTCTGGTTCAAAAGG 9267 Query 23097 CGTGACGTTTACGATGATGCCGCAACGCGCATACGTCGATTTGCCGAGGCAGATAACTAA 23156 |||||||| | ||||||||||||||||| || ||| || ||||| || ||| Sbjct 9268 AGTGACGTT-----TNATGCCGCAACGCGCATAAGTGCTTTTTCCAAGGCAAATCGTTAA 9322 Query 23157 TACGTCACGCGGAATGTTGAAGTGTTCCGGCGTGTTTGCCAGTGCGAAACTGTTCGGCGG 23216 |||| ||||| ||| ||| | ||| ||| |||| || || ||||| || || Sbjct 9323 GACGTTGCGCGGTATGCGGAAATACTCCACAGTGCGAGCCAAGGCAAAGCTGTTGGGAGG 9382 Query 23217 AATGATCAGGCCTTGGCCGTTTGGAACGTGCTTCGTAACGAAATTGTCTTCGGTGAAATT 23276 |||||| | | || || ||| || ||| ||| | | ||| |||| Sbjct 9383 AATGATGCAGTAATCACC--TTCGAA-----ATC--AACAAAACTTTTTTCATCAAAATG 9433 Query 23277 CTTTGGATCGACAACCGCGTTATTCAGGTTGGTGAAAACCTTGAATTCGTTACCGCAACG 23336 |||||||||||| || | | | | ||||||||||| || |||||| ||||||| Sbjct 9434 CTTTGGATCGACCACAGTACTGTGGATATTGGTGAAAACTTTAAATTCGCGCGCGCAACG 9493 Query 23337 AATATCGTAGCCGTAGCT 23354 ||| || ||||| || || Sbjct 9494 AATGTCATAGCCATAACT 9511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897375114497840