Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_017972.1
Length=280538
Score E
Sequences producing significant alignments: (Bits) Value
seq8176 145 1e-29
>seq8176
Length=26989
Score = 145 bits (160), Expect = 1e-29
Identities = 260/378 (69%), Gaps = 14/378 (4%)
Strand=Plus/Plus
Query 22977 TTCATCAGATTCAAAGAACAGAATTTGTGCGCAACCTTCGCCAGCGTAGATCAGTGCCGG 23036
||| ||| |||||| || | | ||||||||||||||||||||| || || ||| ||
Sbjct 9148 TTCGTCACCTTCAAAAAATAACACTTGTGCGCAACCTTCGCCAGCATAAATTTTTGCAGG 9207
Query 23037 GCTTGGTGTGGTATTGGAAAACTCCAGAGTAAGCGAGCCTTTCCATTCTGGTTCCAGCGG 23096
|| || |||||||| || || || || | |||||| |||||||||||| | ||
Sbjct 9208 TAACGGCGTTGTATTGGAGAATTCTAGCGTTACATAGCCTTGCCATTCTGGTTCAAAAGG 9267
Query 23097 CGTGACGTTTACGATGATGCCGCAACGCGCATACGTCGATTTGCCGAGGCAGATAACTAA 23156
|||||||| | ||||||||||||||||| || ||| || ||||| || |||
Sbjct 9268 AGTGACGTT-----TNATGCCGCAACGCGCATAAGTGCTTTTTCCAAGGCAAATCGTTAA 9322
Query 23157 TACGTCACGCGGAATGTTGAAGTGTTCCGGCGTGTTTGCCAGTGCGAAACTGTTCGGCGG 23216
|||| ||||| ||| ||| | ||| ||| |||| || || ||||| || ||
Sbjct 9323 GACGTTGCGCGGTATGCGGAAATACTCCACAGTGCGAGCCAAGGCAAAGCTGTTGGGAGG 9382
Query 23217 AATGATCAGGCCTTGGCCGTTTGGAACGTGCTTCGTAACGAAATTGTCTTCGGTGAAATT 23276
|||||| | | || || ||| || ||| ||| | | ||| ||||
Sbjct 9383 AATGATGCAGTAATCACC--TTCGAA-----ATC--AACAAAACTTTTTTCATCAAAATG 9433
Query 23277 CTTTGGATCGACAACCGCGTTATTCAGGTTGGTGAAAACCTTGAATTCGTTACCGCAACG 23336
|||||||||||| || | | | | ||||||||||| || |||||| |||||||
Sbjct 9434 CTTTGGATCGACCACAGTACTGTGGATATTGGTGAAAACTTTAAATTCGCGCGCGCAACG 9493
Query 23337 AATATCGTAGCCGTAGCT 23354
||| || ||||| || ||
Sbjct 9494 AATGTCATAGCCATAACT 9511
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 897375114497840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |