Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_017984.1 Length=46387 Score E Sequences producing significant alignments: (Bits) Value seq10695 98.7 3e-16 >seq10695 Length=46784 Score = 98.7 bits (108), Expect = 3e-16 Identities = 285/435 (66%), Gaps = 4/435 (1%) Strand=Plus/Plus Query 34761 TTGCTTCTGTTTTTGCATTAGTAGCAAATCCATTGTTGTCATCATCTGCTGTAGTTGCAA 34820 |||||| || || ||||| ||||| |||||||| ||||| | || || | | Sbjct 27355 TTGCTT--GTCTTAGCATTCACCGCAAAGCCATTGTTACAGTCATCGCCAGTGGTGGTGA 27412 Query 34821 TATTTAGCACACCACAAAGCGTATAACGCTTACCGTAACTAATAGCCGCACCTATGGCTT 34880 | || | | ||| || |||||||| ||||| ||||| | || || ||||| || || | Sbjct 27413 TGTTCAATATACCGCATAGCGTATAGCGCTTGCCGTATGTGATTGCTGCACCGATAGCCT 27472 Query 34881 GAATACCATTCATGCCTTTTGTGGCTGCATCTGTAGGCAAGATAAGATT-GTTTTCGATC 34939 | || ||||||||||| ||| | || || || ||||| ||| | || ||| | Sbjct 27473 GCATCTTGTTCATGCCTTTGGTGACGGCTTCGGTTGGCAATTCAAGCTCAGTGGTCGCTG 27532 Query 34940 ATATGCCCAGCTTTATGACGCAATTGGCAAGTCACCTCAACAAATCCTTTTTCAACTTGC 34999 |||| || |||| || || | ||| | || || | | | | ||| Sbjct 27533 -TATGGCCGTCTTTGTGCATCAGTGTGCAGACAATCTTTACCGACTCAATGCCGTTCTGC 27591 Query 35000 GAATTTTTAAAAGAAACACTAAAGCCATATTTAGACAATATTGGGCGAACAATGTTTACA 35059 | | | || || || |||||||||| | || | || || | || || |||||| Sbjct 27592 TGAGTGCTGAATGACACGCTAAAGCCATGCTCGGATAGAATCGGCTGCACGATTTTTACA 27651 Query 35060 ATATCTTCCAATGGCGTATATGTTGTGCTATATGATTTTTTAGTATGAGCAATTACGGGT 35119 ||||| || ||||| | ||||||||||| || ||| || ||||| ||||| || || Sbjct 27652 ATATCCTCTAATGGTGCGTATGTTGTGCTGTAGCTTTTCTTTGTATGCGCAATCACTGGA 27711 Query 35120 ATTTCTTTGCTCATTTCTGCAAAGTCATTGTTAAAATCAATTACAGCTTGTTGCGCCATA 35179 || | ||| |||| | ||||| | ||||| | || | ||||| ||| ||| Sbjct 27712 ATCTTTTTAGACATTAAAGAGAAGTCGTGATTAAAGTTGATAATCGCTTGCTGCTTCATG 27771 Query 35180 ACTTCTTTTTGCATT 35194 | |||||||||||| Sbjct 27772 ATGTCTTTTTGCATT 27786 Score = 98.7 bits (108), Expect = 3e-16 Identities = 162/230 (70%), Gaps = 9/230 (4%) Strand=Plus/Plus Query 45462 CTTGCAGAGCGTCAAAAAACCTATGGGTGTTTTGAAGATGTAGCTACGGTTACAGAGGAA 45521 || |||||||||||| || || ||| |||||| ||||| ||| || || ||| | Sbjct 39239 CTAGCAGAGCGTCAATCCACTTACGGGAATTTTGAGGATGTTGCTTTTGTGACTGAGAAC 39298 Query 45522 ATTAT-TAAATCATT--AAAAAT---AGGCAATTAC---GACAACATGCCAAAACCCCAC 45572 ||||| | || || |||| | || ||| | || | ||||||| | ||| Sbjct 39299 ATTATGTCCATTCTTGCAAAAGTTAGAGTGAATGGCCTTGATGATTTGCCAAATACTCAC 39358 Query 45573 AAGATGGCTATGTATATGATTGCTTCAAAAATGGCTCGTCTTGTTAACGGCGATCACAAT 45632 ||||| | || |||||||| || |||||||| ||| | || ||||| ||| || Sbjct 39359 CGCATGGCGTTATACATGATTGCATCTAAAATGGCGCGTATCGTGAACGGTGATTTTAAC 39418 Query 45633 CATCTTGATAGCTGGCATGACATTGGTGGGTATGCGAAGTTAATTGAAAA 45682 ||||||||| |||||||||||||| || ||| | ||| |||||||||| Sbjct 39419 CATCTTGATTCTTGGCATGACATTGGCGGCTATTCAAAGCTAATTGAAAA 39468 Score = 98.7 bits (108), Expect = 3e-16 Identities = 124/161 (77%), Gaps = 12/161 (7%) Strand=Plus/Plus Query 8485 TGGTATTATTTGATTATTGATCG--AATCTGTGGGCGACACAAGCCA-AT--AAG-ACCA 8538 ||||| |||| |||||||| | ||||||||||||||||| | || ||| || | Sbjct 42940 TGGTAATATTCTCTTATTGATTGTGAATCTGTGGGCGACACAGGTAGTATCGAAGTACAA 42999 Query 8539 GATAGACAG-GTCAG-GTATGCAACTATTCGCACGTTGCCGATTAATAATTTTA---ATT 8593 || | ||| | || | |||||||||||||||||||||| || ||||| | | | | Sbjct 43000 GAGAAGCAGAGCCACTGCATGCAACTATTCGCACGTTGCCAATCAATAAAATAAGCAAGT 43059 Query 8594 A-ATTGTATATAGCTTGGGGCATGCAATCCCGATTGATGTT 8633 | |||| | ||||||||||||||| |||||||||||||||| Sbjct 43060 AGATTGCAGATAGCTTGGGGCATGAAATCCCGATTGATGTT 43100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148282502945074