Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28]
19,473 sequences; 155,550,413 total letters
Query= NC_017984.1
Length=46387
Score E
Sequences producing significant alignments: (Bits) Value
seq10695 98.7 3e-16
>seq10695
Length=46784
Score = 98.7 bits (108), Expect = 3e-16
Identities = 285/435 (66%), Gaps = 4/435 (1%)
Strand=Plus/Plus
Query 34761 TTGCTTCTGTTTTTGCATTAGTAGCAAATCCATTGTTGTCATCATCTGCTGTAGTTGCAA 34820
|||||| || || ||||| ||||| |||||||| ||||| | || || | |
Sbjct 27355 TTGCTT--GTCTTAGCATTCACCGCAAAGCCATTGTTACAGTCATCGCCAGTGGTGGTGA 27412
Query 34821 TATTTAGCACACCACAAAGCGTATAACGCTTACCGTAACTAATAGCCGCACCTATGGCTT 34880
| || | | ||| || |||||||| ||||| ||||| | || || ||||| || || |
Sbjct 27413 TGTTCAATATACCGCATAGCGTATAGCGCTTGCCGTATGTGATTGCTGCACCGATAGCCT 27472
Query 34881 GAATACCATTCATGCCTTTTGTGGCTGCATCTGTAGGCAAGATAAGATT-GTTTTCGATC 34939
| || ||||||||||| ||| | || || || ||||| ||| | || ||| |
Sbjct 27473 GCATCTTGTTCATGCCTTTGGTGACGGCTTCGGTTGGCAATTCAAGCTCAGTGGTCGCTG 27532
Query 34940 ATATGCCCAGCTTTATGACGCAATTGGCAAGTCACCTCAACAAATCCTTTTTCAACTTGC 34999
|||| || |||| || || | ||| | || || | | | | |||
Sbjct 27533 -TATGGCCGTCTTTGTGCATCAGTGTGCAGACAATCTTTACCGACTCAATGCCGTTCTGC 27591
Query 35000 GAATTTTTAAAAGAAACACTAAAGCCATATTTAGACAATATTGGGCGAACAATGTTTACA 35059
| | | || || || |||||||||| | || | || || | || || ||||||
Sbjct 27592 TGAGTGCTGAATGACACGCTAAAGCCATGCTCGGATAGAATCGGCTGCACGATTTTTACA 27651
Query 35060 ATATCTTCCAATGGCGTATATGTTGTGCTATATGATTTTTTAGTATGAGCAATTACGGGT 35119
||||| || ||||| | ||||||||||| || ||| || ||||| ||||| || ||
Sbjct 27652 ATATCCTCTAATGGTGCGTATGTTGTGCTGTAGCTTTTCTTTGTATGCGCAATCACTGGA 27711
Query 35120 ATTTCTTTGCTCATTTCTGCAAAGTCATTGTTAAAATCAATTACAGCTTGTTGCGCCATA 35179
|| | ||| |||| | ||||| | ||||| | || | ||||| ||| |||
Sbjct 27712 ATCTTTTTAGACATTAAAGAGAAGTCGTGATTAAAGTTGATAATCGCTTGCTGCTTCATG 27771
Query 35180 ACTTCTTTTTGCATT 35194
| ||||||||||||
Sbjct 27772 ATGTCTTTTTGCATT 27786
Score = 98.7 bits (108), Expect = 3e-16
Identities = 162/230 (70%), Gaps = 9/230 (4%)
Strand=Plus/Plus
Query 45462 CTTGCAGAGCGTCAAAAAACCTATGGGTGTTTTGAAGATGTAGCTACGGTTACAGAGGAA 45521
|| |||||||||||| || || ||| |||||| ||||| ||| || || ||| |
Sbjct 39239 CTAGCAGAGCGTCAATCCACTTACGGGAATTTTGAGGATGTTGCTTTTGTGACTGAGAAC 39298
Query 45522 ATTAT-TAAATCATT--AAAAAT---AGGCAATTAC---GACAACATGCCAAAACCCCAC 45572
||||| | || || |||| | || ||| | || | ||||||| | |||
Sbjct 39299 ATTATGTCCATTCTTGCAAAAGTTAGAGTGAATGGCCTTGATGATTTGCCAAATACTCAC 39358
Query 45573 AAGATGGCTATGTATATGATTGCTTCAAAAATGGCTCGTCTTGTTAACGGCGATCACAAT 45632
||||| | || |||||||| || |||||||| ||| | || ||||| ||| ||
Sbjct 39359 CGCATGGCGTTATACATGATTGCATCTAAAATGGCGCGTATCGTGAACGGTGATTTTAAC 39418
Query 45633 CATCTTGATAGCTGGCATGACATTGGTGGGTATGCGAAGTTAATTGAAAA 45682
||||||||| |||||||||||||| || ||| | ||| ||||||||||
Sbjct 39419 CATCTTGATTCTTGGCATGACATTGGCGGCTATTCAAAGCTAATTGAAAA 39468
Score = 98.7 bits (108), Expect = 3e-16
Identities = 124/161 (77%), Gaps = 12/161 (7%)
Strand=Plus/Plus
Query 8485 TGGTATTATTTGATTATTGATCG--AATCTGTGGGCGACACAAGCCA-AT--AAG-ACCA 8538
||||| |||| |||||||| | ||||||||||||||||| | || ||| || |
Sbjct 42940 TGGTAATATTCTCTTATTGATTGTGAATCTGTGGGCGACACAGGTAGTATCGAAGTACAA 42999
Query 8539 GATAGACAG-GTCAG-GTATGCAACTATTCGCACGTTGCCGATTAATAATTTTA---ATT 8593
|| | ||| | || | |||||||||||||||||||||| || ||||| | | | |
Sbjct 43000 GAGAAGCAGAGCCACTGCATGCAACTATTCGCACGTTGCCAATCAATAAAATAAGCAAGT 43059
Query 8594 A-ATTGTATATAGCTTGGGGCATGCAATCCCGATTGATGTT 8633
| |||| | ||||||||||||||| ||||||||||||||||
Sbjct 43060 AGATTGCAGATAGCTTGGGGCATGAAATCCCGATTGATGTT 43100
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 148282502945074
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |