Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq489 120 2e-22 seq12041 95.1 1e-14 >seq489 Length=77466 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| ||||| || || ||||| || ||||| |||| | || | |||| ||| Sbjct 4412 ACCAAATGCAGGGTCGACTCCTTTTGAATGTTGTAGTCGGAAAGTGTGCGTCCATCTTCC 4471 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||| || ||||| |||| ||||||||| || || |||||||| ||||| || || Sbjct 4472 AGTTGCTTGCCGGCAAAGATCAGACGCTGTTGGTCTGGGGGAATGCCCTCTTTGTCCTGG 4531 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | |||||||| | || || || | || | || || Sbjct 4532 ATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCAACCTCCAAGGTAATGGTCTTA 4591 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | |||||| || ||||||||||| Sbjct 4592 CCGGTGAGAGTTTTGACGAATATCTGCAT 4620 >seq12041 Length=12732 Score = 95.1 bits (104), Expect = 1e-14 Identities = 202/300 (67%), Gaps = 4/300 (1%) Strand=Plus/Plus Query 13651 ATTGAATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCG 13710 || ||| ||||| ||||| || | | ||||||| | || | ||| ||| ||| || | Sbjct 4764 ATCGAACTTTCGCTTACATCCCTGATAATTCATATAGCGCACTTTGCCAAAGACAGGCCT 4823 Query 13711 CTCCATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTT 13770 ||| ||| | | || || | || | || |||||||||||||| | ||||| || Sbjct 4824 CTCGGCCCATCCTTGGTCATGTATACCACCAATGGACCACATGCAACCCACGTAACCATT 4883 Query 13771 GGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATT--AAAGCC 13828 ||||| | |||||| || || || || || || | ||| |||| ||| |||||| Sbjct 4884 CGGATCCCTTCCATCTAAGCTATACTTATCATTAAGCAGTATAGCGT--ATTCCAAAGCC 4941 Query 13829 ACTGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATATCCG 13888 |||| | |||||| | ||| ||||| |||||||| || | || | | || Sbjct 4942 TGCTCCGGCGTTTCTGCCCATTCAAGTATCTTTTTTGCCCAATACATGCGCAAAAAGCCA 5001 Query 13889 TGCATTTTGCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCACAATATGTCATGAGTT 13948 |||||||| ||| || ||| || ||| ||||||||||| || || |||||| Sbjct 5002 TGCATTTTAGCTTCGCTTACAAGTTGCAACTGTGCAGCGTTCCATAAATCATCGTGAGTT 5061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396184352361861