Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq367 138 9e-28 seq17788 109 4e-19 >seq367 Length=36422 Score = 138 bits (152), Expect = 9e-28 Identities = 231/330 (70%), Gaps = 8/330 (2%) Strand=Plus/Minus Query 9067 GGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGAC---A 9123 ||||| ||||| | || ||||| || || ||||| || || || | | | || | Sbjct 14852 GGATAGAAGATACGCTCGCAAATGAACTGCGCAATTCTATCGCC---ACGCGCAACTTTA 14796 Query 9124 AAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCG 9183 || ||||| ||||||||||| || || || || || | ||||| | |||||||| || Sbjct 14795 AAATCTGTATCGGAATGATTAAATAGTACAACGCCAAGATTACCGCGATAATCCTCGTCA 14736 Query 9184 ATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATT 9243 | ||||| ||||| ||||| ||||||| |||||| || || ||||| || ||||| | Sbjct 14735 ACGACACCGGCACCAACGTCTATGAAGTTCTTGACAGCAAGGCCAGAACGCGGCGCAACG 14676 Query 9244 CGACCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGGTCATGACCAGCCCCTTGCCG 9303 |||||||| | ||| | || | || || | |||||||| | | | ||||||| Sbjct 14675 CGACCGTATGAACCCTCTGGCACCTGGACTTGTAAGTCGGTTTTAATGATTGCCTTGCCT 14616 Query 9304 TGTTTTGGAATCACGGTGTCGTAGCCGCTCTTGAGATCAAACCCAGCTGCCCTGTCCGAT 9363 || ||| | || ||||| || | || | ||| || || || || | ||||| Sbjct 14615 CGTGCTGGCACAACAGTGTCATATGCACTGCACAAATCCAAGCCGGCCGCGCGTTCCGAG 14556 Query 9364 CC-CTTCGTGGGCGCAAAAGCGTTTTCGGT 9392 || ||| | ||||||||| ||||||||||| Sbjct 14555 CCTCTTTG-GGGCGCAAAGGCGTTTTCGGT 14527 >seq17788 Length=7208 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| |||||||| | || ||||| || ||||| |||||||| || ||||| Sbjct 2415 AGGCGCAAAACCAAATGCAAAGTCGATTCTTTCTGGATATTATAATCAGAGAGTGTTCGA 2356 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||||||| || || ||||| || || || |||||||| | |||| || || Sbjct 2355 CCATCTTCCAACTGTTTGCCAGCAAAGATTAGACGTTGTTGATCTGGAGGAATTCCTTCT 2296 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| ||| ||| | | || || || | || ||||| | || Sbjct 2295 TTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGAAGGTTCGACCTCAAGAGTG 2236 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| | ||||| |||||||||||||| Sbjct 2235 ATGGTCTTACCCGTGAGGGTTTTAACAAAAATCTGCAT 2198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380847193150779