Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_019442.1 Length=60523 Score E Sequences producing significant alignments: (Bits) Value seq17463 168 3e-37 seq12138 86.0 2e-12 >seq17463 Length=6653 Score = 168 bits (186), Expect = 3e-37 Identities = 144/175 (82%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 17392 AAACAAGGAGGCCATAAAACGGGCCACGCCAGAAGGCGTCATTGAACTGGCCGAACTCTG 17451 || || ||| |||||||| |||||||||| ||||||||||| ||||| ||||||||| | Sbjct 3499 AATCAGGGACGCCATAAAGCGGGCCACGCTCGAAGGCGTCAT-GAACTAGCCGAACTCGG 3557 Query 17452 CTTTGTGTTTACGCGCGGTACGGGGAGACAGCTCGCGACGCACGCTGTCTGCGACGTCTA 17511 |||||||||| ||||||||||||| | || |||| | ||||||||||||||| ||||| Sbjct 3558 CTTTGTGTTTCTGCGCGGTACGGGGTGCCACCTCGAGGCGCACGCTGTCTGCGGTGTCTA 3617 Query 17512 GCTTTTGAAGCATAACTAATCCTC-TTTACGTGGCATGATGATGCCAACGTGCTT 17565 | | ||||| ||| | | ||||| || ||| ||| |||||| ||| |||||||| Sbjct 3618 GTTGTTGAAACATCCCAAGTCCTCATTGACGCGGCGTGATGACGCCGACGTGCTT 3672 >seq12138 Length=25834 Score = 86.0 bits (94), Expect = 2e-12 Identities = 93/122 (76%), Gaps = 6/122 (5%) Strand=Plus/Minus Query 13455 TCCTACTTGATATTTTGA----TTTACCCCTTTTGAGAGGGTGACCGGGCGCTCAAAACC 13510 ||||| |||| |||||| ||| ||||||||||||||| | ||||| ||||||||| Sbjct 7437 TCCTA--TGATTTTTTGAGAAGTTTGCCCCTTTTGAGAGGGCGGCCGGGTGCTCAAAACG 7380 Query 13511 GCAAGTAGTCGGCGGGCATATTCCCATTGCTGGTATTGTATTAGCCGCACGCCCGGTCAT 13570 | | ||| |||||| |||| || | ||| ||||||||||| ||| ||||| ||| Sbjct 7379 GTCATAGGTCCGCGGGCGTATTTCCCCTAAGGGTCTTGTATTAGCCTCACACCCGGCCAT 7320 Query 13571 AA 13572 || Sbjct 7319 AA 7318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193507242672610