Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phortica_20variegata_20[genbank_20GCA_5F001014415.1_202015-05-28] 19,473 sequences; 155,550,413 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq4404 109 1e-18 >seq4404 Length=3800 Score = 109 bits (120), Expect = 1e-18 Identities = 166/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 48425 TACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCA 48484 ||||| || ||||||||||| || || || || ||||| || |||||| | |||||| Sbjct 2375 TACATTTCGGAGTGCACATTTTCCATGGCAATTTGGAAGCCATAGAAGCAACGTGCCTCA 2316 Query 48485 AACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAA 48544 ||| || |||||| | ||| | ||| | || ||| ||||| || || ||||| ||| Sbjct 2315 GTCACTTGAACTTCTTGGCTGAAACGCTCGACCAAATTTTCATTCACAATGCCATCGGAA 2256 Query 48545 GCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTC 48604 ||||||||||| || | || || | |||||| |||||||| | || || | | Sbjct 2255 GCAGCAAAGAAAGCCAACACGTGCGATATGAAATGACGCTCGTTATCAGTAAGCTTAGCC 2196 Query 48605 CAGCCCTGT-ACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 || |||| | ||| || ||| || ||||| || || |||||||| || || Sbjct 2195 CA-ATCTGTCAAGTCCTTCGACAGATCTACTTCCTCAACTGTCCAGAATGATGC 2143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931306053272320